PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS71120.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C2H2
Protein Properties Length: 260aa    MW: 29135.6 Da    PI: 7.3966
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS71120.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0598117120
                 EEETTTTEEESSHHHHHHHH CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                 ++Cp C ksF+r  n++ H+
  EPS71120.1  98 FSCPVCFKSFNRYNNMQMHM 117
                 89*****************9 PP
2zf-C2H214.78.9e-05182204123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 + C +Cgk F  + + ++H +++
  EPS71120.1 182 FACRKCGKAFAVRGDWRTHEKNC 204
                 78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.36E-589120No hitNo description
PROSITE profilePS501579.72398125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.9E-698117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.4398120IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SuperFamilySSF576671.26E-6164202No hitNo description
Gene3DG3DSA:3.30.160.605.5E-6168202IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.871182202IPR007087Zinc finger, C2H2
SMARTSM0035554182202IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
ASPPLLPLLS LSPTRSQQEK NKNASEDDFD CENENGVTVA LRIGLPNPSS SDLAASLLTS  60
DEDDEEEGGG SGCGRMMNRG GQYWIPTPSQ ILIGATQFSC PVCFKSFNRY NNMQMHMWGH  120
GSQYRRGPES LRGTQPTAML RLPCYCCAPD CRNNIDHPRA KPLKDFRTLQ THYKRKHGIK  180
PFACRKCGKA FAVRGDWRTH EKNCGKLWYC VCGSDFKHKR SLKDHVRAFG TGHGAYGGGG  240
RDRFEEEEEE EDPASEIEQE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002277537.11e-135PREDICTED: zinc finger protein WIP2
SwissprotQ9SVY11e-124ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLS8CWB70.0S8CWB7_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_08s0007g08070.t011e-134(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-107C2H2 family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  3. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]