PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71098.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

C2H2

Protein Properties

Length: 382aa MW: 42298.1 Da PI: 7.8587

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71098.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.8	0.00017	309	331	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F++ L H r+H EPS71098.1 309 HVCPFCDRVFKNGQALGGHKRSH 331 79******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00355	9.7	59	81	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	8.787	59	86	IPR007087	Zinc finger, C2H2
Pfam	PF13912	0.0014	60	81	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	61	81	IPR007087	Zinc finger, C2H2
SMART	SM00355	7.7	233	255	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	2.42E-7	233	255	No hit	No description
PROSITE profile	PS50157	9.286	233	255	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.5E-8	233	257	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	235	255	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.42E-7	304	331	No hit	No description
SMART	SM00355	0.015	309	331	IPR015880	Zinc finger, C2H2-like
Pfam	PF13912	1.6E-8	309	331	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.141	309	331	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	311	331	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MGMIEDHPVS MRQYRGAAAA TNSSESDEKI GSLLPKPVPH FANGRRPGYG GGDITTTGRT 60 CRKCSRVFGS VKALSGHMTW HSNRVKCLRD DDQSWASDLD SDDDDRIIIR TKQKKRAAKS 120 GSSVSEIDVE GEEEEGALCL MLLSKDSGNK CSEYSDNNSV ILEAKSSPKK KKNKGWEDET 180 HSDSDYFLDE SAKLEPGIRR KLFANDPLVR SKRRTSPPPP PPTNGSLQKR SKYECLNCKK 240 AFSSYQALGG HRPCHRRSCC EEESKTGENS PEEESSSIAA LGAAASKRTS AAAAMYEKKN 300 KGKKSKLPHV CPFCDRVFKN GQALGGHKRS HFIGNHRIKP VVTTKKDKKQ PSDMLDLNLP 360 APEEDEEEDE DEEDSDEQFS GW

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MGMIEDHPVS MRQYRGAAAA TNSSESDEKI GSLLPKPVPH FANGRRPGYG GGDITTTGRT  60
CRKCSRVFGS VKALSGHMTW HSNRVKCLRD DDQSWASDLD SDDDDRIIIR TKQKKRAAKS  120
GSSVSEIDVE GEEEEGALCL MLLSKDSGNK CSEYSDNNSV ILEAKSSPKK KKNKGWEDET  180
HSDSDYFLDE SAKLEPGIRR KLFANDPLVR SKRRTSPPPP PPTNGSLQKR SKYECLNCKK  240
AFSSYQALGG HRPCHRRSCC EEESKTGENS PEEESSSIAA LGAAASKRTS AAAAMYEKKN  300
KGKKSKLPHV CPFCDRVFKN GQALGGHKRS HFIGNHRIKP VVTTKKDKKQ PSDMLDLNLP  360
APEEDEEEDE DEEDSDEQFS GW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012855455.1	6e-64	PREDICTED: zinc finger protein ZAT9-like
TrEMBL	S8E5M5	0.0	S8E5M5_9LAMI; Uncharacterized protein
STRING	Migut.E00055.1.p	2e-63	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1343	22	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60580.1	6e-19	C2H2-like zinc finger protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]