PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS71023.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 549aa MW: 59659.6 Da PI: 7.5222

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS71023.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.3	1.2e-12	371	416	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++K++ L A+ YI++L EPS71023.1 371 NHVEAERQRREKLNQRFYALRAVVPTV-----SKMDKSSLLGDAISYINEL 416 799*********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.2E-29	43	163	IPR025610	Transcription factor MYC/MYB N-terminal
Pfam	PF14215	3.7E-9	168	205	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	16.984	367	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.57E-17	368	437	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.24E-15	370	421	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.7E-17	371	438	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-10	371	416	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.4E-15	373	422	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 549 aa Download sequence Send to blast
SVLNTVMSSR PDPGSFWPIG RQISIPSPPP ARADHAVFSQ ENLQQRLIAL IEGAGESFTY 60 AIFWQDSATG FGVPSFLSWG DGYYKGEENR GNRKTTSSPS EQEHRKKVLR ELNSLVSGTP 120 AHSSLDEFVE EDVTDTEWFF LISMTHIFES GSGIPGQALY TSTPALGYGL QTLVCIPSSN 180 GVVELGSTAV IFQSLDLVKK VVSLFNFNGL DAASFSGTGS WGTPPPYLAQ HHRPSSSSLE 240 GSSLNAKQLG SASENPSACH QQTIGSRDFR FSSSSEMNHH PPTGNGNKKS PPASRGSNDD 300 GKHSSDVIAP SSGAPPPFKN NNGGVAESSD AHSDIEASVA KDAGSSKVVD PQKRPKKRGR 360 KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPTVSKM DKSSLLGDAI SYINELKSKL 420 QNSELDMEEM RAQLESLKKK KKKKEEEEEG LPPHNETKYS APSENKYGGG GATDIEVKII 480 GSDAMIRIQC SRKNHPAAKL MAAFKELDLD LHHASISVMN ESMIQRATVK MGATSFSQDQ 540 LRTTLMSKI

Sequence ? help Back to Top

Protein Sequence Length: 549 aa Download sequence Send to blast

SVLNTVMSSR PDPGSFWPIG RQISIPSPPP ARADHAVFSQ ENLQQRLIAL IEGAGESFTY  60
AIFWQDSATG FGVPSFLSWG DGYYKGEENR GNRKTTSSPS EQEHRKKVLR ELNSLVSGTP  120
AHSSLDEFVE EDVTDTEWFF LISMTHIFES GSGIPGQALY TSTPALGYGL QTLVCIPSSN  180
GVVELGSTAV IFQSLDLVKK VVSLFNFNGL DAASFSGTGS WGTPPPYLAQ HHRPSSSSLE  240
GSSLNAKQLG SASENPSACH QQTIGSRDFR FSSSSEMNHH PPTGNGNKKS PPASRGSNDD  300
GKHSSDVIAP SSGAPPPFKN NNGGVAESSD AHSDIEASVA KDAGSSKVVD PQKRPKKRGR  360
KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPTVSKM DKSSLLGDAI SYINELKSKL  420
QNSELDMEEM RAQLESLKKK KKKKEEEEEG LPPHNETKYS APSENKYGGG GATDIEVKII  480
GSDAMIRIQC SRKNHPAAKL MAAFKELDLD LHHASISVMN ESMIQRATVK MGATSFSQDQ  540
LRTTLMSKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	9e-50	38	208	4	195	Transcription factor MYC3
4rqw_B	9e-50	38	208	4	195	Transcription factor MYC3
4rs9_A	9e-50	38	208	4	195	Transcription factor MYC3
4yz6_A	9e-50	38	208	4	195	Transcription factor MYC3
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	352	360	KRPKKRGRK
2	437	443	KKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in jasmonic acid (JA) gene regulation. With MYC2 and MYC3, controls additively subsets of JA-dependent responses. Can form complexes with all known glucosinolate-related MYBs to regulate glucosinolate biosynthesis. Binds to the G-box (5'-CACGTG-3') of promoters. Activates multiple TIFY/JAZ promoters. {ECO:0000269\|PubMed:21321051, ECO:0000269\|PubMed:21335373, ECO:0000269\|PubMed:23943862}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. Not induced by jasmonic acid. {ECO:0000269\|PubMed:12679534, ECO:0000269\|PubMed:21335373}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011082365.1	0.0	transcription factor MYC4-like
Swissprot	O49687	1e-144	MYC4_ARATH; Transcription factor MYC4
TrEMBL	S8E5G0	0.0	S8E5G0_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.E00934.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3300	24	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17880.1	1e-126	bHLH family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Chico JM, et al. Repression of Jasmonate-Dependent Defenses by Shade Involves Differential Regulation of Protein Stability of MYC Transcription Factors and Their JAZ Repressors in Arabidopsis. Plant Cell, 2014. 26(5): p. 1967-1980 [PMID:24824488] Gasperini D, et al. Multilayered Organization of Jasmonate Signalling in the Regulation of Root Growth. PLoS Genet., 2015. 11(6): p. e1005300 [PMID:26070206] Qi T, et al. Regulation of Jasmonate-Induced Leaf Senescence by Antagonism between bHLH Subgroup IIIe and IIId Factors in Arabidopsis. Plant Cell, 2015. 27(6): p. 1634-49 [PMID:26071420] de Torres Zabala M, et al. Novel JAZ co-operativity and unexpected JA dynamics underpin Arabidopsis defence responses to Pseudomonas syringae infection. New Phytol., 2016. 209(3): p. 1120-34 [PMID:26428397] Yu J, et al. JAZ7 negatively regulates dark-induced leaf senescence in Arabidopsis. J. Exp. Bot., 2016. 67(3): p. 751-62 [PMID:26547795] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Schmiesing A,Emonet A,Gouhier-Darimont C,Reymond P Arabidopsis MYC Transcription Factors Are the Target of Hormonal Salicylic Acid/Jasmonic Acid Cross Talk in Response to Pieris brassicae Egg Extract. Plant Physiol., 2016. 170(4): p. 2432-43 [PMID:26884488] Thatcher LF, et al. Characterization of a JAZ7 activation-tagged Arabidopsis mutant with increased susceptibility to the fungal pathogen Fusarium oxysporum. J. Exp. Bot., 2016. 67(8): p. 2367-86 [PMID:26896849] Gao C, et al. MYC2, MYC3, and MYC4 function redundantly in seed storage protein accumulation in Arabidopsis. Plant Physiol. Biochem., 2016. 108: p. 63-70 [PMID:27415132] Gimenez-Ibanez S, et al. JAZ2 controls stomata dynamics during bacterial invasion. New Phytol., 2017. 213(3): p. 1378-1392 [PMID:28005270] Lian TF,Xu YP,Li LF,Su XD Crystal Structure of Tetrameric Arabidopsis MYC2 Reveals the Mechanism of Enhanced Interaction with DNA. Cell Rep, 2017. 19(7): p. 1334-1342 [PMID:28514654] Wang H, et al. The bHLH Transcription Factors MYC2, MYC3, and MYC4 Are Required for Jasmonate-Mediated Inhibition of Flowering in Arabidopsis. Mol Plant, 2017. 10(11): p. 1461-1464 [PMID:28827172] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470] Han X, et al. Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons. Plant Physiol., 2018. 176(4): p. 2871-2885 [PMID:29496884]