PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS70979.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C2H2 | ||||||||
Protein Properties | Length: 171aa MW: 19656.4 Da PI: 10.0556 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 19.6 | 2.4e-06 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F r nL+ H r+H EPS70979.1 39 FVCEICNQGFQRDQNLQMHRRRH 61 89********************9 PP | |||||||
2 | zf-C2H2 | 18.4 | 6e-06 | 116 | 138 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k + +s++k Hi+t+ EPS70979.1 116 WVCGKCSKGYAVQSDYKAHIKTC 138 58*******************98 PP | |||||||
3 | zf-C2H2 | 12.6 | 0.0004 | 146 | 164 | 5 | 23 |
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr +++ H+ t+ EPS70979.1 146 DCGRVFSRVESFIEHQDTC 164 9***************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.19E-6 | 38 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 9.1E-6 | 38 | 61 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 0.0067 | 39 | 57 | No hit | No description |
SMART | SM00355 | 0.0095 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.783 | 39 | 61 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 80 | 110 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.2E-4 | 107 | 137 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.19E-6 | 111 | 136 | No hit | No description |
SMART | SM00355 | 98 | 116 | 143 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 171 aa Download sequence Send to blast |
SDENGTAAVK RKRRPAGTPD PDAEVISLSP KTLLESDRFV CEICNQGFQR DQNLQMHRRR 60 HKVPWKLLKR ENPTARKRVF VCPESTCLHH DPAHALGDLV GIKKHFRRKH SDRKQWVCGK 120 CSKGYAVQSD YKAHIKTCGT RGHSCDCGRV FSRVESFIEH QDTCEMGRFR S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-17 | 114 | 165 | 5 | 56 | Zinc finger protein JACKDAW |
5b3h_F | 1e-17 | 114 | 165 | 5 | 56 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating starch metabolism by binding directly to the promoter of QQS (PubMed:21556057). The IDD14beta isoform attenuates the transcription factor activity by competitively forming heterodimers with reduced DNA-binding capacity(PubMed:21556057). Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Has a redundant role with IDD16 in directing leaf and floral organ morphogenesis (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:21556057, ECO:0000269|PubMed:24039602}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009618827.1 | 1e-113 | PREDICTED: protein SHOOT GRAVITROPISM 5-like | ||||
Refseq | XP_016500111.1 | 1e-113 | PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X1 | ||||
Refseq | XP_016500112.1 | 1e-113 | PREDICTED: protein SHOOT GRAVITROPISM 5-like isoform X2 | ||||
Refseq | XP_019227007.1 | 1e-113 | PREDICTED: protein SHOOT GRAVITROPISM 5-like | ||||
Swissprot | Q9C9X7 | 1e-104 | IDD14_ARATH; Protein indeterminate-domain 14 | ||||
TrEMBL | S8CUD0 | 1e-124 | S8CUD0_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009618827.1 | 1e-112 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1022 | 24 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68130.1 | 1e-107 | indeterminate(ID)-domain 14 |
Publications ? help Back to Top | |||
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