PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70917.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HSF

Protein Properties

Length: 344aa MW: 39557 Da PI: 4.2486

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70917.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113.3	1.6e-35	14	106	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k ye+++de++++liswse+++sfv++de++f++++LpkyFkh nf+SFvRQLn+YgF+kv++++ w+F+++ F g+k+ll++i EPS70917.1 14 FLVKCYEMVSDESTNDLISWSESKDSFVIYDESRFSSQLLPKYFKHGNFSSFVRQLNIYGFRKVDTDR---------WQFANEAFVSGQKHLLRNIT 101 9***************************************************************99.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 r+k++ EPS70917.1 102 RRKQQ 106 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.09E-33	9	103	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.3E-52	10	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Gene3D	G3DSA:1.10.10.10	3.1E-36	11	103	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	1.3E-30	14	103	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-18	14	37	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-18	52	64	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	53	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.7E-18	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MVKSLENGIS LPPFLVKCYE MVSDESTNDL ISWSESKDSF VIYDESRFSS QLLPKYFKHG 60 NFSSFVRQLN IYGFRKVDTD RWQFANEAFV SGQKHLLRNI TRRKQQQLQS SSSSQRKSLK 120 EEIDELPPQP SEENDDKRAA LWKEVEILKT DKNALTQQLK KLRQHQQNSQ SKVLLLTDQL 180 NGMEKNQQQM LSFIVMVMQR PEFILQFVQT KENGWHLAEN ANANKLSEVT DDCVSSSPSP 240 SPPPDGTIVP YQPPNSLEAP PPQDSMDLDL DLDLDLDFSS YELRDLLDDS DFFTGLNEER 300 LNSLNLDFPT AENNPEKLLL ADAPENDEML DRLLSWDPSE DDDE

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MVKSLENGIS LPPFLVKCYE MVSDESTNDL ISWSESKDSF VIYDESRFSS QLLPKYFKHG  60
NFSSFVRQLN IYGFRKVDTD RWQFANEAFV SGQKHLLRNI TRRKQQQLQS SSSSQRKSLK  120
EEIDELPPQP SEENDDKRAA LWKEVEILKT DKNALTQQLK KLRQHQQNSQ SKVLLLTDQL  180
NGMEKNQQQM LSFIVMVMQR PEFILQFVQT KENGWHLAEN ANANKLSEVT DDCVSSSPSP  240
SPPPDGTIVP YQPPNSLEAP PPQDSMDLDL DLDLDLDFSS YELRDLLDDS DFFTGLNEER  300
LNSLNLDFPT AENNPEKLLL ADAPENDEML DRLLSWDPSE DDDE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	6e-25	10	103	25	129	Heat shock factor protein 1
5d5v_B	6e-25	10	103	25	129	Heat shock factor protein 1
5d5v_D	6e-25	10	103	25	129	Heat shock factor protein 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070552.1	1e-126	heat stress transcription factor A-8
TrEMBL	S8EEE7	0.0	S8EEE7_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.E00498.1.p	1e-122	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA12235	22	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67970.1	9e-68	heat shock transcription factor A8

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]