PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70639.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 102aa    MW: 11561.4 Da    PI: 10.0849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70639.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.93.3e-124286755
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 +Er RR ri  ++ +L++l+P+     +k  s a++L +Av++IksLq
  EPS70639.1 42 LAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKSLQ 86
                68*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.3483585IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-163899IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.52E-113990No hitNo description
Gene3DG3DSA:4.10.280.109.3E-164098IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-134191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-94286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
QFSMSQATIG MGSMEKLFNI PQDSVPCKIR AKRGCATHPR SLAERERRTR ISGKLKKLQD  60
LVPNMDKQTS YADMLDLAVQ HIKSLQNQVQ KLNKEMEHCS CG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084160.14e-58transcription factor bHLH128 isoform X1
RefseqXP_027117036.17e-58transcription factor bHLH128-like isoform X1
RefseqXP_027117037.17e-58transcription factor bHLH128-like isoform X2
SwissprotQ8H1024e-49BH128_ARATH; Transcription factor bHLH128
TrEMBLS8CTP02e-70S8CTP0_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_05s0124g00240.t015e-56(Vitis vinifera)
STRINGXP_007142611.15e-56(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43140.24e-55bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]