PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70626.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family CPP
Protein Properties Length: 268aa    MW: 29259.1 Da    PI: 8.5989
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70626.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR521.4e-16138176341
         TCR   3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                 +k+CnCkkskClk+YC+Cfaag++C+e C C +C+Nk  
  EPS70626.1 138 CKRCNCKKSKCLKLYCDCFAAGVYCAEPCACIGCFNKPA 176
                 89**********************************975 PP
2TCR48.22.1e-15223261139
         TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                 ++k+gCnCk+s C kkYCeC+++g+ Cs +C+Ce+C+N 
  EPS70626.1 223 RHKRGCNCKRSGCNKKYCECYQSGVGCSINCRCESCRNA 261
                 589***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011147.2E-18136177IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.554137263IPR005172CRC domain
PfamPF036382.9E-12139174IPR005172CRC domain
SMARTSM011142.8E-14223264IPR033467Tesmin/TSO1-like CXC domain
PfamPF036386.1E-11225261IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
QLSVLYRRMK RRCLVFESTG ACLEQHSVEN SGFDSPLFPQ SNGNVFANQQ LTQRQLLPGV  60
GLQLNSVAAF ASGRLLFGNS SSLSSVYPTD CTFLGTENVE NHRDLSLGDP HEAIIPSSSN  120
SPKRKRPRME KSEEAGACKR CNCKKSKCLK LYCDCFAAGV YCAEPCACIG CFNKPAHDET  180
VQATRRQIET RNPLAFAPKV IAPSTDSQSD APEGSGKTPV SARHKRGCNC KRSGCNKKYC  240
ECYQSGVGCS INCRCESCRN AFGRKDGN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1813926012120Protein lin-54 homolog
5fd3_B1e-1813926012120Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073448.12e-95protein tesmin/TSO1-like CXC 2 isoform X1
RefseqXP_011073452.11e-95protein tesmin/TSO1-like CXC 2 isoform X4
RefseqXP_020547912.13e-96protein tesmin/TSO1-like CXC 2 isoform X5
SwissprotF4JIF51e-73TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
SwissprotQ8L5488e-74TCX3_ARATH; Protein tesmin/TSO1-like CXC 3
TrEMBLS8CZT90.0S8CZT9_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.G00370.1.p4e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24672345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22780.11e-73Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]