PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70463.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TCP
Protein Properties Length: 371aa    MW: 40214 Da    PI: 6.2368
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70463.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP124.61.1e-38421872133
         TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....ssssasec..eaesssssasnsssg...... 88 
                  g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a  +i el+      + ++++ +  e+ ss+ + +++s++      
  EPS70463.1  42 SGGKDRHSKVLTSKGLRDRRVRLSVNTAIQFYDLQDRLGYDQPSKAVEWLLKAAASSISELPPMsnpfPDTPKQVVsdEKRSSVDQFGFDSAEvemdgg 140
                 689*************************************************************55442222222234444444444444444889999 PP

         TCP  89 .kaaksaakskksqksaasalnlak.esrakarararertrekmrik 133
                  +   s++ s+ s++s+ s l+l++ esr kar+ra+er +ek + +
  EPS70463.1 141 gDPGFSQQVSSTSETSKCSGLSLSRsESRIKARERAKERVAEKEKES 187
                 87777777888889999999*****9*************99998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-3843186IPR005333Transcription factor, TCP
PROSITE profilePS5136931.81744102IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.68166185IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
DNMDEQFREE DDGGGKGGGG ADPAARFYNW PSSRIVRVSR ASGGKDRHSK VLTSKGLRDR  60
RVRLSVNTAI QFYDLQDRLG YDQPSKAVEW LLKAAASSIS ELPPMSNPFP DTPKQVVSDE  120
KRSSVDQFGF DSAEVEMDGG GDPGFSQQVS STSETSKCSG LSLSRSESRI KARERAKERV  180
AEKEKESLNM NHPISLTTSF TELLNGGGGG GINADGSNPN DSFMKSSPPK NWSGSDYFTT  240
GGLLAPSVSN HFYPVASPLF AVAPPEHQSE FSFMPDHLSQ VVNNNHHHEN GSSEYNLSFS  300
IASSAANYSS SGLPGFNRGT LQSNSSQHPL PPHLQRLPDA SVPGFFFGTA VDNHHQQFVT  360
GYDARLQLCY G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2349103155Putative transcription factor PCF6
5zkt_B1e-2349103155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11319GGKGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00063PBMTransfer from AT4G18390Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096599.11e-140transcription factor TCP2-like
RefseqXP_011096600.11e-140transcription factor TCP2-like
RefseqXP_020554008.11e-140transcription factor TCP2-like
TrEMBLS8E4280.0S8E428_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M00891.1.p1e-133(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24642252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.29e-53TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]