PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS70400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | bHLH | ||||||||
Protein Properties | Length: 145aa MW: 16429.6 Da PI: 10.7508 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 27.5 | 5.8e-09 | 86 | 126 | 9 | 54 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR++i +++ L++l+P +K++ a++L +A +Y+k L EPS70400.1 86 ARQRREKISEKIRVLQKLVPGG-----TKMDTASMLDEAANYLKFL 126 69******************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.831 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.27E-14 | 82 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.5E-13 | 83 | 132 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.65E-9 | 83 | 131 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.8E-13 | 85 | 135 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.6E-6 | 86 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
SKNREKQPRR ESHRCHRPNS SSTISFQNSP TIIGSSDEPD PEAIAQMKEM IYRAAAFRPV 60 NFGNETVEKP KRKNVRISND PQTVAARQRR EKISEKIRVL QKLVPGGTKM DTASMLDEAA 120 NYLKFLRSQV KALESLGPNK IDSHN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020227985.1 | 6e-64 | transcription factor bHLH87 | ||||
Swissprot | Q8S3D2 | 1e-63 | BH087_ARATH; Transcription factor bHLH87 | ||||
TrEMBL | S8CUD7 | 1e-103 | S8CUD7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Cagra.1757s0024.1.p | 3e-63 | (Capsella grandiflora) | ||||
STRING | Bostr.19424s0519.1.p | 2e-63 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4350 | 22 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21330.1 | 4e-66 | bHLH family protein |
Publications ? help Back to Top | |||
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