PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70260.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

HSF

Protein Properties

Length: 265aa MW: 30172.2 Da PI: 10.0415

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70260.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	117.5	8.2e-37	21	112	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d+++++++sws ++nsfvv+d+ efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k+ll++i EPS70260.1 21 FLVKTYDMVDDPSTDRVVSWSPTNNSFVVWDSAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKHLLKSIT 108 9******************999*************************************999.........****************** PP XXXX CS HSF_DNA-bind 99 rkks 102 r+k EPS70260.1 109 RRKP 112 *986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.0E-40	13	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	8.43E-37	16	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.6E-64	17	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	5.3E-33	21	110	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-21	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-21	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	60	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	3.1E-21	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
GGGGGSALPH PMPSANGPPP FLVKTYDMVD DPSTDRVVSW SPTNNSFVVW DSAEFARDLL 60 PKYFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ KHLLKSITRR KPTHGHPMHQ 120 QPSNTQSSVA CVEVGKFGLE EEVERLKRDK NVLMQELVRV RQQQQATDGQ LQTMIQRLQV 180 MEQRQQQMMS FLAKAVNSPG FLAQFMQQPN DGGTQKITEG NKKRRLKQES LEDDYSVVPS 240 DGQIVKYQPL INEAAKSILR QIMKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-31	4	110	10	129	Heat shock factor protein 1
5d5v_B	2e-31	4	110	10	129	Heat shock factor protein 1
5d5v_D	2e-31	4	110	10	129	Heat shock factor protein 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	220	227	NKKRRLKQ
2	221	226	KKRRLK

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781208.1	1e-150	PREDICTED: LOW QUALITY PROTEIN: heat shock factor protein HSF8
Swissprot	Q40152	1e-135	HSF8_SOLLC; Heat shock factor protein HSF8
TrEMBL	S8CTT4	0.0	S8CTT4_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009781208.1	1e-150	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5054	21	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32330.1	1e-107	heat shock transcription factor A1D

Publications ? help Back to Top
Zhu B, et al. Identification and characterization of a novel heat shock transcription factor gene, GmHsfA1, in soybeans (Glycine max). J. Plant Res., 2006. 119(3): p. 247-56 [PMID:16570125] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Cai SY, et al. HsfA1a upregulates melatonin biosynthesis to confer cadmium tolerance in tomato plants. J. Pineal Res., 2017. [PMID:28095626] Zhou J, et al. Heat Shock Factor HsfA1a Is Essential for R Gene-Mediated Nematode Resistance and Triggers H2O2 Production1. Plant Physiol., 2018. 176(3): p. 2456-2471 [PMID:29339397]