PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70091.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Dof

Protein Properties

Length: 315aa MW: 35087.9 Da PI: 8.8423

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70091.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124	4.8e-39	81	141	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +e++++cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk++s EPS70091.1 81 PERIIPCPRCNSMDTKFCYFNNYNTNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKTTS 141 67899*****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	79	138	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-31	84	139	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.491	85	139	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	87	123	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009658	Biological Process	chloroplast organization
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MSQLVKDPRI KLFGKTIQLP EEEKTVGGGG LLLHHRTCES AAAGCSMPNP PPQSDKVQPG 60 EEDFTAVSMK TDDDLSPRRK PERIIPCPRC NSMDTKFCYF NNYNTNQPRH FCKNCQRYWT 120 AGGTMRNVPV GAGRRKNKTT SSVAQFLRHQ MAPTTFASSD APPLCESLNI ADNKTAVDDQ 180 SSSIDDKGPP LPHPWHSVQW VVPPPPFAYP VVMPLYSYPV VPWIISPPPM PPSPAPLGKH 240 SRDPSEKLLW VPKTLRVEES CSMMRGIQRN SRSLFKAFDQ CQSKDKEQET TSTVLQANPA 300 ALSRSLSFHE TSSRT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. The stability of CDF2 is controlled by 'GIGANTEA' and redundantly by ADO3, ADO2 and/or ADO1. {ECO:0000250, ECO:0000269\|PubMed:19619493}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. Regulated at the protein level by ADO3 and GI pos-transcriptionally. {ECO:0000269\|PubMed:19619493}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015582505.1	2e-62	cyclic dof factor 2 isoform X3
Swissprot	Q93ZL5	6e-48	CDF2_ARATH; Cyclic dof factor 2
TrEMBL	S8CYI7	0.0	S8CYI7_9LAMI; Uncharacterized protein
STRING	Migut.K01320.1.p	6e-58	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	2e-47	cycling DOF factor 1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]