PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS70083.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family WRKY
Protein Properties Length: 442aa    MW: 47655.2 Da    PI: 7.8695
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS70083.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.3e-31188244259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  DgynWrKYGqK+vk se+prsYY+Ct+++C+vkkkvers  d++++eitY+g+H h+
  EPS70083.1 188 GDGYNWRKYGQKNVKASECPRSYYKCTHPDCTVKKKVERSL-DGRICEITYKGQHAHP 244
                 5****************************************.***************8 PP
2WRKY108.43.4e-34343401159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 ldDgy+WrKYGqK+vkg+++prsYYrCt+agC+v+k+ver+++dpk v++tYeg+Hnh+
  EPS70083.1 343 LDDGYRWRKYGQKVVKGNPHPRSYYRCTFAGCNVRKHVERASSDPKSVITTYEGKHNHD 401
                 59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-27182246IPR003657WRKY domain
PROSITE profilePS5081122.596182246IPR003657WRKY domain
SuperFamilySSF1182909.15E-25184246IPR003657WRKY domain
SMARTSM007743.3E-33187245IPR003657WRKY domain
PfamPF031063.5E-23189244IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-37329403IPR003657WRKY domain
SuperFamilySSF1182905.23E-30335403IPR003657WRKY domain
PROSITE profilePS5081138.193338403IPR003657WRKY domain
SMARTSM007741.4E-40343402IPR003657WRKY domain
PfamPF031069.6E-27344401IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDDASSSAPK PKPATIKVPP RASSMEFLGS SCFSGFSPGP MTLVSNLFPD QAHFSFSQLL  60
AGAMASPSPL AANADAKSKL VTTPGSRPPN LVLTPPPPQM EVLSSMFMVT PGISPSGLLN  120
SPGFLSPLQS PFGMSHQQAL AHVTAQAAAF KQMQAAETAN EEDAPPPPEE AKESSDNKLL  180
VSSDKPAGDG YNWRKYGQKN VKASECPRSY YKCTHPDCTV KKKVERSLDG RICEITYKGQ  240
HAHPPPPQPS KRGRESSLSD AAASSQVENI NRLKATTTDN PQQTSDHQVA GEDGVVEVEV  300
EEDKAPVAKK RSSSSDDTGG ASSHQTVVES KIVLQTRSEV DLLDDGYRWR KYGQKVVKGN  360
PHPRSYYRCT FAGCNVRKHV ERASSDPKSV ITTYEGKHNH DLPIGRSHSQ QSQKASRIPP  420
ASNEMEGQEP ATLHFKGDEV IA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A7e-39189403877Probable WRKY transcription factor 4
2lex_A7e-39189403877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011085706.11e-168probable WRKY transcription factor 4 isoform X1
RefseqXP_020551498.11e-168probable WRKY transcription factor 3 isoform X3
SwissprotQ9XI901e-119WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLS8E3090.0S8E309_9LAMI; Uncharacterized protein
STRINGMigut.H00670.1.p1e-142(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43142344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.18e-93WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]