PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS70044.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Trihelix

Protein Properties

Length: 310aa MW: 34797.2 Da PI: 7.9089

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS70044.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	60.5	4e-19	17	101	2	77
trihelix 2 WtkqevlaLiearremeerlrrg.........klkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsesss 77 Wt qe+++Liea++ +eer r+ k ++ +W++v ++++++g+ rs++qC++kw+nl +++kk++e ek+ +++s++ EPS70044.1 17 WTVQETMVLIEAKKMDEERRMRRleggdgersKPAELRWKWVEDYCWRHGCLRSQNQCNDKWDNLMRDFKKVREYEKRTNADSKR 101 ***********98888777532223333336999***************************************96444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.957	9	82	IPR017877	Myb-like domain
Pfam	PF13837	7.6E-13	16	97	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MDGGGGDVVR EYRKGNWTVQ ETMVLIEAKK MDEERRMRRL EGGDGERSKP AELRWKWVED 60 YCWRHGCLRS QNQCNDKWDN LMRDFKKVRE YEKRTNADSK RSYWMIDKNE RKDNNLPSSM 120 LPEIYEALLQ AAERKIQRSV TPNLAASKST ALTPLPVQQY PNPNCQARPL LLPPPPSQQQ 180 PQSEPPFPQA LPAVDSYTSD YSDSPAKRRK TGEGAGVSGG GAMEDIGSAI AKIGAMIADA 240 IRCSDEIGEK HHREMVALHE KTLEMEESKA EMTRQGINGL ADAINKLANS ILALAAGNRH 300 SPPPPPNHNH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011096762.1	1e-109	trihelix transcription factor ASR3 isoform X1
TrEMBL	S8CS24	0.0	S8CS24_9LAMI; Uncharacterized protein
STRING	Gorai.010G171500.1	1e-103	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4821	22	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-71	Trihelix family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]