PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS70032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 147aa MW: 16136.1 Da PI: 10.2063 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 57.4 | 3.2e-18 | 16 | 61 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd ll ++v++ G+++W++I++ ++ gR++k+c++rw + EPS70032.1 16 KGPWSPEEDGLLRRLVEKQGPRNWSLISKSIP-GRSGKSCRLRWCNQ 61 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 50.5 | 4.8e-16 | 70 | 112 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEd +++a+ +lG++ W++Iar + gRt++ +k++w++ EPS70032.1 70 AFTAEEDATIIRAHGELGNK-WAAIARLLS-GRTDNAIKNHWNST 112 79******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 24.686 | 11 | 66 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.67E-31 | 14 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-15 | 15 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-18 | 16 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.1E-26 | 17 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.37E-14 | 18 | 60 | No hit | No description |
SMART | SM00717 | 2.4E-13 | 67 | 115 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.944 | 68 | 117 | IPR017930 | Myb domain |
CDD | cd00167 | 1.44E-10 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 70 | 116 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.4E-14 | 70 | 112 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 147 aa Download sequence Send to blast |
FSGMAARKEE SSERAKGPWS PEEDGLLRRL VEKQGPRNWS LISKSIPGRS GKSCRLRWCN 60 QLSPAVEHRA FTAEEDATII RAHGELGNKW AAIARLLSGR TDNAIKNHWN STLKRKCGAS 120 STSSSDEFCA FDADAPPPIK RAASFGP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 4e-40 | 13 | 117 | 1 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00476 | DAP | Transfer from AT4G37260 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011074411.1 | 2e-72 | transcription factor MYB44-like | ||||
Swissprot | O23160 | 6e-64 | MYB73_ARATH; Transcription factor MYB73 | ||||
TrEMBL | S8EBT9 | 1e-102 | S8EBT9_9LAMI; Myb-like protein (Fragment) | ||||
STRING | Migut.C00524.1.p | 9e-71 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1586 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G37260.1 | 2e-66 | myb domain protein 73 |
Publications ? help Back to Top | |||
---|---|---|---|
|