PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS70016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 173aa MW: 20339.2 Da PI: 9.3955 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.6 | 1.2e-26 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rienk++rq +f kRr g+lKKA+ELSvLCda+va+iifs++gkl e+ s EPS70016.1 10 RIENKRKRQASFGKRRDGLLKKAHELSVLCDADVALIIFSNEGKLCEFTS 59 8**********************************************975 PP | |||||||
2 | K-box | 71.8 | 2e-24 | 83 | 173 | 8 | 98 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 + eea +e ++++ +Lk+++++L r+qRh+ GedL++ sl eL +Le ++ sl+++R+kK++++++++ elq+ke++l ++n+aLr+k+ EPS70016.1 83 EEEEAPTEGRYRDYLNLKSRLQSLLRSQRHFFGEDLKNFSLGELDRLEILMDASLNRVRAKKTQHMIDELAELQQKENKLMKINRALRNKV 173 457777888999****************************************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 29.674 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-33 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.79E-29 | 2 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.09E-31 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 8.1E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.1E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.7E-20 | 89 | 173 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 12.175 | 89 | 173 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 173 aa Download sequence Send to blast |
MGRGRVELRR IENKRKRQAS FGKRRDGLLK KAHELSVLCD ADVALIIFSN EGKLCEFTSA 60 HSMDHTLQRY YTANYLPAEE EEEEEEAPTE GRYRDYLNLK SRLQSLLRSQ RHFFGEDLKN 120 FSLGELDRLE ILMDASLNRV RAKKTQHMID ELAELQQKEN KLMKINRALR NKV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 8e-18 | 1 | 74 | 1 | 73 | MEF2C |
5f28_B | 8e-18 | 1 | 74 | 1 | 73 | MEF2C |
5f28_C | 8e-18 | 1 | 74 | 1 | 73 | MEF2C |
5f28_D | 8e-18 | 1 | 74 | 1 | 73 | MEF2C |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011102220.1 | 5e-63 | MADS-box protein CMB1-like | ||||
Refseq | XP_027096635.1 | 1e-63 | MADS-box protein 04g005320-like isoform X3 | ||||
Swissprot | Q39685 | 5e-58 | CMB1_DIACA; MADS-box protein CMB1 | ||||
TrEMBL | S8CYC7 | 1e-122 | S8CYC7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009615088.1 | 1e-58 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA40 | 24 | 625 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 8e-51 | MIKC_MADS family protein |
Publications ? help Back to Top | |||
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