PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS69915.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | GATA | ||||||||
Protein Properties | Length: 231aa MW: 25574.2 Da PI: 9.1645 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.7 | 2.1e-15 | 193 | 222 | 1 | 30 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyy 30 C+ Cg+t TplWR+gp g tLCnaCGl++ EPS69915.1 193 CRDCGATMTPLWRKGPAGRQTLCNACGLKH 222 ****************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13456 | 2.4E-6 | 8 | 69 | No hit | No description |
SuperFamily | SSF57716 | 4.75E-12 | 185 | 224 | No hit | No description |
SMART | SM00401 | 6.6E-8 | 187 | 230 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.982 | 187 | 222 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 5.9E-15 | 191 | 222 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.18E-12 | 192 | 231 | No hit | No description |
Pfam | PF00320 | 8.9E-13 | 193 | 222 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 193 | 218 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MAHRSAIRLS KEHGEYMTAR LMMEFAVGMP LQHVILEGDC LALIQTLNHP STMADTRLDT 60 ILQDILHLTS GKMSNKGKGE SQGGDEKEEE KLDLTLSLGH SSKRKETLNK KLWGYNIPTI 120 NPNTITCSSS SFNTHYQATT DYYKYSYDGA MPMAINAAVG NVVVPPSPSN YAYGRSDMAS 180 PNRKRNAHES RVCRDCGATM TPLWRKGPAG RQTLCNACGL KHLRMAKKDG H |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | S8CSV2 | 1e-174 | S8CSV2_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16673 | 5 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 8e-11 | GATA transcription factor 16 |
Publications ? help Back to Top | |||
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