PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS69901.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ERF
Protein Properties Length: 179aa    MW: 19959.5 Da    PI: 9.4321
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS69901.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.1e-1984134255
         AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                 +y+GVr+++ +g+++AeIrdp     k +r++lg++ taeeAa a+++a+ +++g
  EPS69901.1  84 HYRGVRQRP-WGKFAAEIRDP---ArKGARVWLGTYETAEEAASAYDRAAYRMRG 134
                 7********.**********8...4445*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.0E-3283143IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-2384144IPR016177DNA-binding domain
CDDcd000188.28E-2884143No hitNo description
SMARTSM003801.1E-3584148IPR001471AP2/ERF domain
PROSITE profilePS5103224.31684142IPR001471AP2/ERF domain
PfamPF008471.1E-1384134IPR001471AP2/ERF domain
PRINTSPR003674.1E-118596IPR001471AP2/ERF domain
PRINTSPR003674.1E-11108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
PAYCRSASFN LIPCLTETWG ELPLRVDDSE DMVIYGILRD ALNDGWTPFA EAIKSEHHQP  60
LADSPPMTPP PSPPPTQPDK GRRHYRGVRQ RPWGKFAAEI RDPARKGARV WLGTYETAEE  120
AASAYDRAAY RMRGCKALLN FPHKIGSGEP EPIRISPKRR SPEPDSDAGS PKRTRSKAA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A8e-3583149470ATERF1
3gcc_A8e-3583149470ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by ethephon (ethylene-releasing compound) in buds and to a lower extent in leaves. Strongly induced by cycloheximide and mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by both protein kinases and protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022868653.12e-77ethylene-responsive transcription factor 1-like
SwissprotQ404793e-74ERF2_TOBAC; Ethylene-responsive transcription factor 2
TrEMBLS8CY221e-127S8CY22_9LAMI; Ethylene-responsive transcription factor 2 (Fragment)
STRINGPGSC0003DMT4000413311e-74(Solanum tuberosum)
STRINGMigut.F00528.1.p2e-74(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-47ethylene responsive element binding factor 1
Publications ? help Back to Top
  1. Nakano T,Nishiuchi T,Suzuki K,Fujimura T,Shinshi H
    Studies on transcriptional regulation of endogenous genes by ERF2 transcription factor in tobacco cells.
    Plant Cell Physiol., 2006. 47(4): p. 554-8
    [PMID:16452120]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]