PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS69845.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Trihelix

Protein Properties

Length: 295aa MW: 34359.7 Da PI: 6.844

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS69845.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76	5.9e-24	9	105	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 +W++++v++Li+a++++ e+ + + kk++W++vsk+m+erg +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d ++ EPS69845.1 9 KWSDSMVRLLITAVSYISEEAGGEDhahrrkmlslHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPSLLDMMD 105 7************988887743335566677779*****************************************669******99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	3.5E-22	7	131	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
GKKGWQRVKW SDSMVRLLIT AVSYISEEAG GEDHAHRRKM LSLHKKGKWK SVSKVMAERG 60 HFVSPQQCED KFNDLNKRYK RLNEILGRGT SCEVVENPSL LDMMDHVSNK EKEEVRKILS 120 SKHLYYEEMC SYHNGNRLHL PPDPDLHHSL RLALMLTDDN DTKSSHEDAA ADHDSEDLED 180 FIGSEQNKRA KKSSQDFSFR NSSISLAPNQ NNDACEGGGK RTQTSSRVTV SLQLEEQRFH 240 IQEQMLELEN ERLKWQQLCQ KQDRELEMMK LENQRMKMEN EQMALELKRK ELGMD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012839235.1	1e-124	PREDICTED: uncharacterized protein LOC105959637
Refseq	XP_012839236.1	1e-124	PREDICTED: uncharacterized protein LOC105959637
TrEMBL	S8CSQ2	0.0	S8CSQ2_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.N03227.1.p	1e-124	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	1e-93

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]