PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS69379.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | ERF | ||||||||
Protein Properties | Length: 116aa MW: 12325.9 Da PI: 10.2931 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.4 | 3.6e-18 | 20 | 68 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g EPS69379.1 20 YKGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVYYLRG 68 9*****99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.8E-35 | 19 | 82 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.115 | 19 | 76 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.19E-22 | 19 | 78 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-30 | 19 | 77 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-11 | 20 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-11 | 20 | 31 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.19E-24 | 20 | 77 | No hit | No description |
PRINTS | PR00367 | 1.1E-11 | 58 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MEDDGGGGGG GGGRRNEKTY KGVRMRKWGK WVAEIREPNK RSRIWLGSYS TPVAAARAYD 60 TAVYYLRGPT AKLNFPEEIS EGRLKDLSPG AIREKAAEVG ARVDALLTGG GGGGLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-16 | 20 | 82 | 15 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00430 | DAP | Transfer from AT4G06746 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012840786.1 | 1e-51 | PREDICTED: ethylene-responsive transcription factor RAP2-10-like | ||||
Swissprot | Q8W3M3 | 1e-45 | RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9 | ||||
TrEMBL | S8CQF9 | 6e-75 | S8CQF9_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.L00172.1.p | 5e-51 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA943 | 23 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G06746.1 | 3e-47 | related to AP2 9 |
Publications ? help Back to Top | |||
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