PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | EPS69353.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 23511.1 Da PI: 7.7157 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25 | 4.4e-08 | 24 | 69 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 grWT E + + +a +++ + +W ++a++++ g+t ++ + EPS69353.1 24 GRWTVAENKAFENALALYDENtpdRWQRVAEMVP-GKTVADVMRQYK 69 8*********************************.****99988875 PP | |||||||
2 | Myb_DNA-binding | 47.8 | 3.3e-15 | 131 | 175 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky EPS69353.1 131 PWTEEEHKLFLMGLKKHGKGDWRNISRNFVITRTPTQVASHAQKY 175 8*****************************99************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 8.295 | 21 | 74 | IPR017884 | SANT domain |
SMART | SM00717 | 2.0E-9 | 22 | 74 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-4 | 24 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.08E-11 | 24 | 79 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.9E-6 | 24 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.99E-7 | 25 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-13 | 122 | 180 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.643 | 124 | 180 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.79E-17 | 126 | 179 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 8.2E-17 | 127 | 179 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 3.3E-13 | 128 | 178 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.02E-11 | 131 | 176 | No hit | No description |
Pfam | PF00249 | 1.3E-13 | 131 | 175 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MEILSPASSY CFSNSSWLAA EDEGRWTVAE NKAFENALAL YDENTPDRWQ RVAEMVPGKT 60 VADVMRQYKE LEDDVSSIEA GLFPFQGYAA DSSPFTLDWG GGGGANFKAA YAPSGGRRSR 120 SSDHERKKGV PWTEEEHKLF LMGLKKHGKG DWRNISRNFV ITRTPTQVAS HAQKYFIRQL 180 SGGKDKRRAS IHDITTLNLD QTQTTTLNNS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-16 | 26 | 88 | 11 | 73 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_022875364.1 | 1e-104 | transcription factor DIVARICATA-like | ||||
Swissprot | Q8S9H7 | 1e-103 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | S8E174 | 1e-156 | S8E174_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009603384.1 | 1e-100 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA458 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G38090.1 | 4e-93 | MYB family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|