PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS68923.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 203aa MW: 22947.2 Da PI: 10.7782 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W++ Ed ll d++++ G g+W++ ++ g+ R++k+c++rw +yl EPS68923.1 14 RGPWSEKEDALLTDYINRNGEGQWRSLPKNAGLLRCGKSCRLRWMNYL 61 89******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 47 | 5.8e-15 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w+++ EPS68923.1 67 RGNIGEDEEDLIVHLHGLLGNR-WSLIAGRLP-GRTDNEIKNYWNTH 111 677789****************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.914 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-27 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.7E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.46E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 22.861 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.2E-12 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-13 | 67 | 111 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.5E-23 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.41E-10 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MGRSPCCSKV GLRRGPWSEK EDALLTDYIN RNGEGQWRSL PKNAGLLRCG KSCRLRWMNY 60 LRPGIKRGNI GEDEEDLIVH LHGLLGNRWS LIAGRLPGRT DNEIKNYWNT HIVKKLQSSG 120 IHLRPHSGFP RPPLPPPAKE PPQVKRSKKR QRKSPPEKED DEQGPPRTVV HRPKPIRISA 180 PAPSLPRLNS WDSYPSVGSS DAD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 12 | 118 | 5 | 110 | B-MYB |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 144 | 152 | KRSKKRQRK |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070362.1 | 3e-85 | transcription repressor MYB5-like | ||||
Swissprot | Q9S9K9 | 3e-61 | MYB3_ARATH; Transcription factor MYB3 | ||||
TrEMBL | S8DZZ2 | 1e-144 | S8DZZ2_9LAMI; Myb transcription factor (Fragment) | ||||
STRING | XP_009607630.1 | 7e-84 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22640.1 | 2e-62 | myb domain protein 3 |