PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS68800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | bHLH | ||||||||
Protein Properties | Length: 119aa MW: 12993.9 Da PI: 9.538 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 13.2 | 0.00016 | 21 | 55 | 15 | 54 |
HHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 15 riNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ +++ L++l+ + +K + a++L +A eYI L EPS68800.1 21 NLTARIAALQQLVSPY-----GKTDTASVLLEALEYITFL 55 67779999****9999.....9***************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.715 | 6 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 9.42E-11 | 6 | 70 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-7 | 15 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
SVEPKRLKAT SFSSSKDKKE NLTARIAALQ QLVSPYGKTD TASVLLEALE YITFLHEQVK 60 VLSAPYLRTA PWRSPNDDEE KCGLKSKGLC LVPLSFTLGV ANSNGADIWA PVKNSPMKS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011091560.1 | 2e-52 | transcription factor bHLH113 isoform X1 | ||||
Refseq | XP_011091561.1 | 2e-52 | transcription factor bHLH113 isoform X2 | ||||
Refseq | XP_011091562.1 | 2e-52 | transcription factor bHLH113 isoform X2 | ||||
Swissprot | Q7XJU1 | 2e-43 | BH154_ARATH; Transcription factor bHLH154 | ||||
Swissprot | Q7XJU2 | 2e-43 | BH153_ARATH; Transcription factor bHLH153 | ||||
TrEMBL | S8CPW8 | 1e-81 | S8CPW8_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Solyc08g014120.2.1 | 2e-48 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10428 | 8 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05710.5 | 9e-46 | bHLH family protein |
Publications ? help Back to Top | |||
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