PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68796.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

GRAS

Protein Properties

Length: 468aa MW: 53206.6 Da PI: 7.118

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68796.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	263.4	8e-81	104	468	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsevsPilkfshlta 98 ++lL +cA+a+ ++d ++++lL+ l+el+sp+gd ++la yf++A + ++ + e+ + ++++ + ++++ f+evsP+l+f+h++ EPS68796.1 104 EQLLRDCATAIVEKDSIRIRRLLWLLNELSSPYGDCEEKLAYYFMQAFLFHSTGfFGRETL---LTAAAEKAHcFDSVVGLILKFQEVSPWLTFGHVAS 199 58999****************************************98888873333333...22222222224444444445*********** PP GRAS 99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvk 197 N aIlea+ege+++H++D++ + ++QWp++l+aLa+R +++p+++iT+v+ + + + ++ r+++fA+ +gvpfef+v+ ++ ++L+v+ EPS68796.1 200 NGAILEAMEGERKIHVLDMSNTLCTQWPTFLEALATRCGDAPEVKITVVALTPAITSVMNVDIAPRMRRFARLMGVPFEFDVI----DGLMNKDSLKVR 294 ***********************************************76669999999****************7....5678899* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 ++Eal+Vn++ +l l l++ r+ +++++ksl Pkvv+ ve+e+d ++ +++erf ++++y+ +d+le +p++see+ +Ere +r i EPS68796.1 295 NDEALIVNCIGALRGLE-----LDE-RKPLIRTIKSLAPKVVTAVEEELDFssSKRNLVERFEGCFRFYTLYLDMLEDCFPATSEEKLILERE-CSRTI 386 *********9997.....444.789***************998545569********************************.89* PP GRAS 295 vnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 + +v+ + ++++e+ +W+ ++++GF+++++s+++++++k+l++k+ g+++ +es ++l+Wkd+p+v+ S+W+ EPS68796.1 387 MRLVCRDDRVgegETKKEENEVHWSGLFRDSGFSTIAYSTDVMDDVKALIKKHR-SGWSMVCESWGMYLTWKDEPVVWSSSWK 468 **986443222678888889***************************9.99***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD010361	2.0E-27	1	62	IPR002675	Ribosomal protein L38e
Pfam	PF01781	2.8E-30	2	64	IPR002675	Ribosomal protein L38e
PROSITE profile	PS50985	37.996	77	449	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.8E-78	104	468	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0006412	Biological Process	translation
GO:0005840	Cellular Component	ribosome
GO:0003735	Molecular Function	structural constituent of ribosome

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MPKQIHEIKD FLLTARRKDA RSVKIKRSKD VVKFKVRCSK YLYTLCVFDP EKADKLKQSL 60 PPDKQQLPLP IPMEGGGGAS IKQCTLLHQP QSGATPSDGP KWSEQLLRDC ATAIVEKDSI 120 RIRRLLWLLN ELSSPYGDCE EKLAYYFMQA FLFHSTGFFG RETLLTAAAE KAHCFDSVVG 180 LILKFQEVSP WLTFGHVASN GAILEAMEGE RKIHVLDMSN TLCTQWPTFL EALATRCGDA 240 PEVKITVVAL TPAITSVMNV DIAPRMRRFA RLMGVPFEFD VIDGLMNKDS LKVRNDEALI 300 VNCIGALRGL ELDERKPLIR TIKSLAPKVV TAVEEELDFS SSKRNLVERF EGCFRFYTLY 360 LDMLEDCFPA TSEEKLILER ECSRTIMRLV CRDDRVGEGE TKKEENEVHW SGLFRDSGFS 420 TIAYSTDVMD DVKALIKKHR SGWSMVCESW GMYLTWKDEP VVWSSSWK

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MPKQIHEIKD FLLTARRKDA RSVKIKRSKD VVKFKVRCSK YLYTLCVFDP EKADKLKQSL  60
PPDKQQLPLP IPMEGGGGAS IKQCTLLHQP QSGATPSDGP KWSEQLLRDC ATAIVEKDSI  120
RIRRLLWLLN ELSSPYGDCE EKLAYYFMQA FLFHSTGFFG RETLLTAAAE KAHCFDSVVG  180
LILKFQEVSP WLTFGHVASN GAILEAMEGE RKIHVLDMSN TLCTQWPTFL EALATRCGDA  240
PEVKITVVAL TPAITSVMNV DIAPRMRRFA RLMGVPFEFD VIDGLMNKDS LKVRNDEALI  300
VNCIGALRGL ELDERKPLIR TIKSLAPKVV TAVEEELDFS SSKRNLVERF EGCFRFYTLY  360
LDMLEDCFPA TSEEKLILER ECSRTIMRLV CRDDRVGEGE TKKEENEVHW SGLFRDSGFS  420
TIAYSTDVMD DVKALIKKHR SGWSMVCESW GMYLTWKDEP VVWSSSWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_B	1e-103	97	468	81	473	Protein SHORT-ROOT
5b3h_B	1e-103	97	468	27	419	Protein SHORT-ROOT
5b3h_E	1e-103	97	468	27	419	Protein SHORT-ROOT
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073835.1	1e-153	protein SHORT-ROOT
TrEMBL	S8CV72	0.0	S8CV72_9LAMI; Uncharacterized protein
STRING	XP_009786324.1	1e-146	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2031	24	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37650.1	1e-105	GRAS family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]