PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68758.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family MYB
Protein Properties Length: 116aa    MW: 13533.8 Da    PI: 10.7247
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68758.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.21.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +lvd +   G ++W+ +++  g+ R++k+c++rw +yl
       EPS68758.1 14 RGSWTSEEDSKLVDFILNNGIPSWRMVPKLAGLMRCGKSCRLRWMNYL 61
                     89********************************************97 PP
2Myb_DNA-binding51.32.7e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T  E++ +++++ +lG++ W++Ia++++ gRt++++k+ w++
       EPS68758.1  67 RGGFTDAEEDMIIQLHSKLGNR-WSKIASHFP-GRTDNEIKNQWNT 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.917961IPR017930Myb domain
SuperFamilySSF466895.24E-2911108IPR009057Homeodomain-like
SMARTSM007171.2E-71363IPR001005SANT/Myb domain
PfamPF002494.6E-121461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.9E-211568IPR009057Homeodomain-like
CDDcd001677.69E-71661No hitNo description
PROSITE profilePS5129424.74162116IPR017930Myb domain
SMARTSM007176.3E-1666114IPR001005SANT/Myb domain
PfamPF002496.6E-1567110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-2769116IPR009057Homeodomain-like
CDDcd001673.35E-1170110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 116 aa     Download sequence    Send to blast
MGRQPCCEKV GLRRGSWTSE EDSKLVDFIL NNGIPSWRMV PKLAGLMRCG KSCRLRWMNY  60
LRPDLKRGGF TDAEEDMIIQ LHSKLGNRWS KIASHFPGRT DNEIKNQWNT RIKKKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator.
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071180.15e-71protein ODORANT1
SwissprotP800733e-61MYB2_PHYPA; Myb-related protein Pp2
SwissprotQ9C7U72e-62MYB20_ARATH; Transcription factor MYB20
TrEMBLS8DZI21e-80S8DZI2_9LAMI; Uncharacterized protein (Fragment)
STRINGcassava4.1_028453m4e-69(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.11e-69myb domain protein 40
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]