PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68755.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family Trihelix
Protein Properties Length: 397aa    MW: 44592.4 Da    PI: 5.7938
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68755.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix84.71.2e-2680164286
    trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                 W ++e++aLi +r+e++  ++++k++k+lWe +s+kmre+gf rsp++C++kw+nl k+ykk k+++ +++ + s ++ y++++e
  EPS68755.1  80 WIQEETRALISLRKEIDLLFNTSKSNKHLWETISRKMREKGFDRSPTMCTDKWRNLLKEYKKSKQNSPDGNGNGSAKMNYYKDIE 164
                 ***********************************************************************99*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-569141IPR009057Homeodomain-like
PROSITE profilePS500908.87372136IPR017877Myb-like domain
SMARTSM007172.1E-476138IPR001005SANT/Myb domain
CDDcd122033.10E-2978143No hitNo description
PfamPF138375.8E-2179166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MYMSDKAPPE DELALDFYNG KQESPHQNNM IIPVTTQSSL QLADVGTGAN TSGDDHSTTN  60
NHNHTNPGCS SGPKKRAETW IQEETRALIS LRKEIDLLFN TSKSNKHLWE TISRKMREKG  120
FDRSPTMCTD KWRNLLKEYK KSKQNSPDGN GNGSAKMNYY KDIEEILNER NKSAPSWKNS  180
SVPNTSVPKV DAFMHFADKA IDETSLTFGP VEADGRSTLN LERGLDHDGH PLAITAADAV  240
GADGVSPWNW RETPGSGDDS NAYEGRVITI KLGGYTKRVG IDASPDAIKE AIKSAFGLRT  300
KRAFWLEDED SVIRAIDRNM PLGNYAIHVD EGLTVKICYY EESGHLPHTE DKTFYTDDEF  360
HEFLTRRGWT CLREYNGYRN VDSLDELCPG VVYRGVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-3974162186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00004PBMTransfer from 920224Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071308.10.0trihelix transcription factor GT-4-like
SwissprotQ9FX531e-159TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLS8CPS60.0S8CPS6_9LAMI; Uncharacterized protein
STRINGMigut.E00236.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51132136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-161Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]