PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68550.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HD-ZIP
Protein Properties Length: 243aa    MW: 27882.3 Da    PI: 4.9627
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68550.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-1768121356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 k+++++ +q+++Le+ Fe  +++  +++ +LA+ lgL+ rq+ +WFqNrRa++k
  EPS68550.1  68 KKRRLSIDQVRTLEKNFELGNKLAPDRKLQLARDLGLQPRQIAIWFQNRRARWK 121
                 4557999**********************************************9 PP
2HD-ZIP_I/II125.42.5e-4067157191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  ekkrrls +qv++LE++Fe  +kL p+rK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy+ Lkr+++a k+en++L++++++L +e+
   EPS68550.1  67 EKKRRLSIDQVRTLEKNFELGNKLAPDRKLQLARDLGLQPRQIAIWFQNRRARWKTKQLEKDYDLLKREFEAAKAENDALHAQNQKLLAEI 157
                  69*************************************************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.71E-1859125IPR009057Homeodomain-like
PROSITE profilePS5007116.81163123IPR001356Homeobox domain
SMARTSM003891.2E-1766127IPR001356Homeobox domain
CDDcd000862.68E-1568124No hitNo description
PfamPF000465.3E-1568121IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.5E-1970130IPR009057Homeodomain-like
PRINTSPR000311.1E-594103IPR000047Helix-turn-helix motif
PROSITE patternPS00027098121IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5103119IPR000047Helix-turn-helix motif
PfamPF021837.4E-12123162IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MDFFHSNFML QSDHAQFQQG AGAGANVYFP VEMNMNSLCE DMNRNTHVAA GVGGEDELSD  60
DGSQLGEKKR RLSIDQVRTL EKNFELGNKL APDRKLQLAR DLGLQPRQIA IWFQNRRARW  120
KTKQLEKDYD LLKREFEAAK AENDALHAQN QKLLAEILAL KKTDDSSIIN LNREQTESEE  180
NSSEMMMMKL DSSPKPKPEM MIPRTDQTVK EETNFCNMFG GVVEEDQTGG GFWPWIEHHN  240
FIN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071017.12e-80homeobox-leucine zipper protein ATHB-13
SwissprotQ8LC035e-64ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13
TrEMBLS8CP950.0S8CP95_9LAMI; Uncharacterized protein
STRINGXP_009360370.19e-76(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.14e-62HD-ZIP family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ribone PA,Capella M,Chan RL
    Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
    J. Exp. Bot., 2015. 66(19): p. 5929-43
    [PMID:26136262]
  4. Wang X, et al.
    Overexpressed BRH1, a RING finger gene, alters rosette leaf shape in Arabidopsis thaliana.
    Sci China Life Sci, 2018. 61(1): p. 79-87
    [PMID:28887625]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]