PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68508.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family B3
Protein Properties Length: 164aa    MW: 18793 Da    PI: 4.5623
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68508.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.43.9e-11851423487
                 SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
          B3  34 ktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                 + lt++d++++s+ v+l      + + ++++lt+GW++Fv  n+Lk+gD++ F+ +++
  EPS68508.1  85 RNLTVYDKTNESFHVTLVGepasDYRNRAFFLTGGWNRFVWYNDLKTGDVIEFYKIEE 142
                 4699*************778885555556************************95543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.08E-1075142IPR015300DNA-binding pseudobarrel domain
CDDcd100172.20E-877157No hitNo description
Gene3DG3DSA:2.40.330.104.4E-879144IPR015300DNA-binding pseudobarrel domain
PfamPF023628.4E-885142IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MVSKNFSKNT RNLFLDDYED ISSESLGFIL VGTTGRFDRT NFILTKVVKL ETKDDLNILR  60
LNAAETVTIV GDISPISFPE DEYARNLTVY DKTNESFHVT LVGEPASDYR NRAFFLTGGW  120
NRFVWYNDLK TGDVIEFYKI EERDEAGRSC YVVNCIKGKN NGEE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS8DYX11e-116S8DYX1_9LAMI; Uncharacterized protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]