PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS68469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C3H | ||||||||
Protein Properties | Length: 129aa MW: 14990.5 Da PI: 10.5115 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.6 | 4.5e-08 | 53 | 74 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 +Cr++++ G C+ G++C+F+H+ EPS68469.1 53 QPCRHYLK-GKCNQGEKCNFSHD 74 58******.*************7 PP | |||||||
2 | zf-CCCH | 23.3 | 1.1e-07 | 108 | 128 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +Cr++ +G+C++G+ C F+H EPS68469.1 108 PCRNYVSSGFCRRGSDCLFSH 128 7******************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.647 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.9E-4 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-7 | 50 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.0E-5 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.6E-6 | 53 | 74 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0069 | 78 | 104 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.455 | 78 | 102 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.056 | 89 | 102 | No hit | No description |
PROSITE profile | PS50103 | 13.159 | 103 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.9 | 106 | 129 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.88E-5 | 107 | 129 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-5 | 108 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.9E-5 | 108 | 128 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 129 aa Download sequence Send to blast |
EDDAGKKKRK RPLTKEKRDR KKKKERMKRA EKNRELGVKR LKLPPVSKPI AKQPCRHYLK 60 GKCNQGEKCN FSHDVVPLTK SKPCGHFALN NCMKGDECPF DHQLSKYPCR NYVSSGFCRR 120 GSDCLFSHE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 8 | 23 | RKRPLTKEKRDRKKKK |
2 | 9 | 23 | KRPLTKEKRDRKKKK |
3 | 16 | 24 | KRDRKKKKE |
4 | 19 | 24 | RKKKKE |
5 | 19 | 41 | RKKKKERMKRAEKNRELGVKRLK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Possesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619049.1 | 2e-54 | PREDICTED: uncharacterized protein LOC104111140 isoform X2 | ||||
Refseq | XP_009619050.1 | 7e-55 | PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4 | ||||
Refseq | XP_009619051.1 | 7e-55 | PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4 | ||||
Refseq | XP_009619052.1 | 7e-55 | PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X4 | ||||
Refseq | XP_016484962.1 | 8e-55 | PREDICTED: zinc finger CCCH domain-containing protein 65-like isoform X3 | ||||
Refseq | XP_016484963.1 | 8e-55 | PREDICTED: zinc finger CCCH domain-containing protein 65-like isoform X3 | ||||
Refseq | XP_019233114.1 | 8e-55 | PREDICTED: zinc finger CCCH domain-containing protein 65 isoform X3 | ||||
Swissprot | Q9LTS7 | 3e-37 | C3H65_ARATH; Zinc finger CCCH domain-containing protein 65 | ||||
TrEMBL | S8CMS7 | 3e-88 | S8CMS7_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | XP_009619048.1 | 8e-54 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7740 | 17 | 20 |
Publications ? help Back to Top | |||
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