PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS68404.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 95aa MW: 11183.7 Da PI: 11.0716 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 67 | 2.4e-21 | 6 | 59 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++++q+++Le+ Fe+ + e+r eLA+ lgL+ rqV+vWFqNrRa++k EPS68404.1 6 KKRRLSPDQVRTLERSFESGDRLEPERRMELARGLGLEPRQVSVWFQNRRARWK 59 45689************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 121.3 | 4.9e-39 | 5 | 95 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 ekkrrls +qv++LE+sFe+ ++Leper++elar Lgl+prqv vWFqnrRAR+k+kqlEkdyeaL+r+++++++ n++L++++++L +++ EPS68404.1 5 EKKRRLSPDQVRTLERSFESGDRLEPERRMELARGLGLEPRQVSVWFQNRRARWKAKQLEKDYEALRRELQEIRALNDALKTHNNKLVSQV 95 69*************************************************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.54 | 1 | 61 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.0E-19 | 4 | 65 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.09E-20 | 5 | 71 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.1E-18 | 6 | 59 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.09E-13 | 6 | 62 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-21 | 7 | 68 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.1E-7 | 32 | 41 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 36 | 59 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.1E-7 | 41 | 57 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.2E-8 | 61 | 95 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 95 aa Download sequence Send to blast |
GGGGEKKRRL SPDQVRTLER SFESGDRLEP ERRMELARGL GLEPRQVSVW FQNRRARWKA 60 KQLEKDYEAL RRELQEIRAL NDALKTHNNK LVSQV |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 61 | RRARWKAKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151416.2 | 3e-40 | homeobox-leucine zipper protein HAT7 | ||||
Swissprot | A2XD08 | 5e-39 | HOX21_ORYSI; Homeobox-leucine zipper protein HOX21 | ||||
Swissprot | Q8S7W9 | 5e-39 | HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21 | ||||
TrEMBL | S8CMM3 | 6e-61 | S8CMM3_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | LPERR03G04660.1 | 2e-40 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 8e-41 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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