PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS68333.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

SRS

Protein Properties

Length: 326aa MW: 34407.9 Da PI: 7.9321

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS68333.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	221	2.4e-68	108	262	4	154
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaeskk 98 g++sCqdCGnqakkdCah+RCRtCCksrgf+C+thvkstWvpaa rrerqq+la a++++ ++ ++ +++++ ++++++ + + +++s++ EPS68333.1 108 GGISCQDCGNQAKKDCAHMRCRTCCKSRGFQCSTHVKSTWVPAAVRRERQQRLAVAHHNHHQQIlskrQKVGDGGNNNSSPSNNNNSLAVCTRRNSSPS 206 789**************************************************99888777655432222233344455555555556667788899 PP DUF702 99 eletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 le s+P+ev+seavfrcvrvs+vddg+++laYqtav+igGhvfkGiLydqG e+ EPS68333.1 207 GLELGSFPSEVNSEAVFRCVRVSAVDDGDDQLAYQTAVNIGGHVFKGILYDQGSES 262 9**************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.1E-63	109	261	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	6.7E-27	111	153	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.2E-28	213	259	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
STGFFSLNPT PNPTTETNPE NWILFRNEEN SNPYKGFELW QPPAHHATEN FLQQRAADAA 60 AGDLYLSAAG PSSSNGRFTI SGGDHSPRSS FLMMRSGGGG LAGSVSGGGI SCQDCGNQAK 120 KDCAHMRCRT CCKSRGFQCS THVKSTWVPA AVRRERQQRL AVAHHNHHQQ ILSKRQKVGD 180 GGNNNSSPSN NNNSLAVCTR RNSSPSGLEL GSFPSEVNSE AVFRCVRVSA VDDGDDQLAY 240 QTAVNIGGHV FKGILYDQGS ESQYIAGETS SGGGSVTAGG VQQLNLIAGG KSAATSATGT 300 SLPDPCLYPT PINTFVPAGT QFFPPP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011100954.1	1e-110	protein SHORT INTERNODES
Swissprot	K4B6C9	1e-84	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	S8DYK7	0.0	S8DYK7_9LAMI; Uncharacterized protein (Fragment)
STRING	EOX90942	3e-92	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA678	24	110

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	3e-66	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]