PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS68328.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 16492.1 Da PI: 10.7973 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.9 | 8.2e-21 | 57 | 105 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+WvAeIr p++ r+r +lg+f+taeeAa a+++a+ kl+g EPS68328.1 57 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 105 8******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.65E-34 | 55 | 115 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 56 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.11E-23 | 56 | 114 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 22.879 | 56 | 113 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-37 | 56 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 57 | 68 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-14 | 57 | 105 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-11 | 79 | 95 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009736 | Biological Process | cytokinin-activated signaling pathway | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:0071472 | Biological Process | cellular response to salt stress | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
LNHLTSYQIL QIQAQFHLLH QMKQQHHLIN HHALSPPPVP MKHHGVIITP QKPVKIFRGV 60 RQRHWGKWVA EIRLPRNRTR LWLGTFDTAE EAALAYDKAA YKLRGDYARL NFPHLRHHLS 120 LSDDLKLLNS SVDAKLQAIC SS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-21 | 57 | 113 | 6 | 63 | ATERF1 |
3gcc_A | 2e-21 | 57 | 113 | 6 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00026 | PBM | Transfer from AT1G78080 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012853381.1 | 6e-62 | PREDICTED: ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | Q8H1E4 | 1e-54 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | S8DYK1 | 1e-100 | S8DYK1_9LAMI; Dehydration responsive element-binding protein 2 (Fragment) | ||||
STRING | Migut.L00108.1.p | 2e-61 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1610 | 24 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 2e-32 | ERF family protein |
Publications ? help Back to Top | |||
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