PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS68254.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family GRAS
Protein Properties Length: 525aa    MW: 57536.1 Da    PI: 6.1432
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS68254.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS412.92.9e-1261555112374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lLl+cAe vs+++le a+++L ++s+la+p g++ qR+aayf eA++ar+++s+ ++y++lp+ + s     +  aa+++f+ +sP++kfsh+taNq
  EPS68254.1 155 LTLLLQCAESVSADNLEDANRILLEISQLATPFGTSAQRVAAYFSEAMSARIVSSCLGIYASLPAVPHS----HKLSAAFQIFNGISPFVKFSHFTANQ 249
                 579*************************************************************99996....7888999******************* PP

        GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp. 198
                 aI ea+e+eervHiiD+di+qGlQWp L++ La+Rp+gpps+R+Tg+g+    s+e+le+tg+rL++fA++lg+pfef + +a+++ +l++e+L v + 
  EPS68254.1 250 AIQEAFEREERVHIIDLDIMQGLQWPGLFHILATRPGGPPSVRLTGLGN----SQEALEATGKRLSDFADRLGLPFEFLP-LAEKVGNLDPERLTVATk 343
                 *************************************************....9**************************.59*************999 PP

        GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297
                 +Ea+aV++    h+l+d ++s ++    +L+++++lsPkvv+vveq+++h ++sFl rf+ea++yysalfdsl a +++eseer++vE++ll+rei+nv
  EPS68254.1 344 REAVAVHWLQ--HSLYDVTGSDAN----TLWFLQRLSPKVVTVVEQDLSH-AGSFLGRFVEAIHYYSALFDSLGACYGEESEERHVVEQQLLSREIRNV 435
                 *********9..999999999999....**********************.899********************************************* PP

        GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 +a  g +r  + + +++Wre+l+++GF++++l  +aa+qa lll +++ dgy++ e++g+l lgWkd  L+++SaWr
  EPS68254.1 436 LAVGGPSRSGEVK-FSNWREKLQQCGFRSISLAGNAAAQATLLLGMFPADGYTLVEDNGALKLGWKDLCLLTASAWR 511
                 *******888776.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.108128491IPR005202Transcription factor GRAS
PfamPF035141.0E-123155511IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0009630Biological Processgravitropism
GO:0009956Biological Processradial pattern formation
GO:0048366Biological Processleaf development
GO:0051457Biological Processmaintenance of protein location in nucleus
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MPTEDVNVWI DSVVKDLVQS SNHLSLSELI HNVRDIIHPC NPNLAGLLEY KLRALAGGIE  60
QQQHDSTTTK ETSSHGAPPF LPSDRPPENR SNTNGMLVLS QGVSSDQWPP PLLNAAISSS  120
FPIPAAETGR SVPTLRGMKE EMRQQQKNEE GLHLLTLLLQ CAESVSADNL EDANRILLEI  180
SQLATPFGTS AQRVAAYFSE AMSARIVSSC LGIYASLPAV PHSHKLSAAF QIFNGISPFV  240
KFSHFTANQA IQEAFEREER VHIIDLDIMQ GLQWPGLFHI LATRPGGPPS VRLTGLGNSQ  300
EALEATGKRL SDFADRLGLP FEFLPLAEKV GNLDPERLTV ATKREAVAVH WLQHSLYDVT  360
GSDANTLWFL QRLSPKVVTV VEQDLSHAGS FLGRFVEAIH YYSALFDSLG ACYGEESEER  420
HVVEQQLLSR EIRNVLAVGG PSRSGEVKFS NWREKLQQCG FRSISLAGNA AAQATLLLGM  480
FPADGYTLVE DNGALKLGWK DLCLLTASAW RPNHHHHHIP APAVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A0.01375121379Protein SCARECROW
5b3h_D0.01375121379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011101980.10.0protein SCARECROW
SwissprotQ2Z2E90.0SCR_IPONI; Protein SCARECROW
TrEMBLS8CM680.0S8CM68_9LAMI; Uncharacterized protein
STRINGMigut.J00002.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA82582430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-138GRAS family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]