PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67979.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family Trihelix
Protein Properties Length: 388aa    MW: 44448.1 Da    PI: 10.2121
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67979.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix963.4e-301093186
    trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                rW+kqe+laL+++r+em+ ++r+++ k+plWeevs+km+e gf+r+ k+Ckek+en+ k+++++ke+++++   + +t+++fdql+
  EPS67979.1 10 RWPKQETLALLRIRSEMDVDFRDSSFKGPLWEEVSRKMAELGFKRTGKKCKEKFENVYKYHRRTKESRSSK--SDGKTYRFFDQLQ 93
                8********************************************************************97..45567******98 PP
2trihelix105.53.7e-33290375187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW+k ev+aLi++r++m+ ++ +g +k+plWe+vs++m++ g++rs+k+Ckekwen+nk++kk+ke++k+r +e+s+tcpyf++l+a
  EPS67979.1 290 RWPKTEVQALIKVRTNMDLKYHDGGAKGPLWEDVSSAMAKLGYTRSAKRCKEKWENINKYFKKVKETNKRR-PEDSKTCPYFHELDA 375
                 8********************************************************************97.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.8E-5769IPR001005SANT/Myb domain
CDDcd122032.26E-25974No hitNo description
PfamPF138375.0E-20995No hitNo description
PROSITE profilePS500907.189967IPR017877Myb-like domain
PROSITE profilePS500907.143283347IPR017877Myb-like domain
SMARTSM007170.0032287349IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-4289346IPR009057Homeodomain-like
PfamPF138371.0E-23289376No hitNo description
CDDcd122031.92E-25289354No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
GDVGGGGGNR WPKQETLALL RIRSEMDVDF RDSSFKGPLW EEVSRKMAEL GFKRTGKKCK  60
EKFENVYKYH RRTKESRSSK SDGKTYRFFD QLQALEENAP PHDTVSSMSP KPITVVPPVP  120
ANDPINAPSP PIHSFPTDPP QIQFPSGLLS TTSSSSSTSS DGDVHRRRGR KRRWKEFFHG  180
LLRDVIHKQE ELHRNFLETV EKRERERMAR DEAWKAREIS RMNREHELLA RERSMAAAKD  240
AAVISFLQKV SEHTDFSISI GNITPTAVSL PEDADTRHHT PGENASSSSR WPKTEVQALI  300
KVRTNMDLKY HDGGAKGPLW EDVSSAMAKL GYTRSAKRCK EKWENINKYF KKVKETNKRR  360
PEDSKTCPYF HELDAIYKQR AKTETPIP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15260KRTGKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022885875.11e-153trihelix transcription factor GT-2-like
RefseqXP_022885876.11e-153trihelix transcription factor GT-2-like
SwissprotQ391171e-131TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLS8CLE80.0S8CLE8_9LAMI; Uncharacterized protein (Fragment)
STRINGSolyc12g056510.1.11e-149(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24022459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-131Trihelix family protein
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]