PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67917.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Protein Properties

Length: 339aa MW: 38369.1 Da PI: 8.4696

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67917.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.9	2.2e-19	18	107	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k+l++s+ + + l lpkkf++eh + + t++l de+g++++ ++++rk++ +++GW++F +a++L egD++vF+l + +f +v ++r EPS67917.1 18 FLKQLLKSHLSGKFYLGLPKKFCDEHLPS--HDGTVILVDEDGQEYSTRYSFRKNR----ISGGWRGFSNAHKLMEGDSLVFHLLEPCRF--KVYIVR 107 89**********************433..3349***********999999....99*******************9887777..666655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	1.4E-22	10	112	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	6.93E-25	12	107	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.23E-28	16	107	No hit	No description
SMART	SM01019	1.1E-24	18	112	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.437	18	109	IPR003340	B3 DNA binding domain
Pfam	PF02362	5.7E-17	18	107	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
LDSHAVVQVN PPSQYPSFLK QLLKSHLSGK FYLGLPKKFC DEHLPSHDGT VILVDEDGQE 60 YSTRYSFRKN RISGGWRGFS NAHKLMEGDS LVFHLLEPCR FKVYIVRACK ASENSVSMVE 120 LPIPDSKKNP LPDPVETEHR VGRVHPTKRK RLIPDDKPGN AITLFNPNVI QSIRNSVPDA 180 KFKDVNDFEA FSIRLDGLIL DSQIPIDVRT RYYYLCCSQK ICNLAIVMIA ETVVIADAIR 240 SSSLSISLHQ LECWEKTLKA FDDLGMVVGF MRSRLHRLIG LSHEYQSNAE TRRAKLAQTE 300 SPWSSMKLLA QNLEAEVKSL VSKNDMISLE FQQVAGAPW

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012836956.1	1e-116	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X1
Refseq	XP_012836957.1	1e-116	PREDICTED: B3 domain-containing protein Os01g0234100-like isoform X2
TrEMBL	S8E6B6	0.0	S8E6B6_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.B00331.1.p	1e-116	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3023	23	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	8e-37	B3 family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]