PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67891.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family C3H
Protein Properties Length: 452aa    MW: 49503.9 Da    PI: 7.7874
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67891.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.47.4e-11131155226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 +++ C+++++t tCk+Gd+C F+H+
  EPS67891.1 131 GEKDCDYYMQTRTCKFGDSCIFHHP 155
                 7889********************8 PP
2zf-CCCH37.53.9e-12181207127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++ C++f++t  Ck+G+rC+F+H++
  EPS67891.1 181 PGQPDCPYFMKTRRCKFGSRCRFNHPK 207
                 5789*********************96 PP
3zf-CCCH39.11.3e-12230254327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C f+++tG Ck+G++CkF H++
  EPS67891.1 230 EPPCAFYMKTGKCKFGATCKFDHPK 254
                 79*********************96 PP
4zf-CCCH413.1e-13300324226
                 -S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                 ++e C+f+++tG CkyG++C+F+H+
  EPS67891.1 300 GEEDCPFYLKTGSCKYGATCHFNHP 324
                 5799********************9 PP
5zf-CCCH34.43.6e-11379402427
                 ---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  +C+f+++tGtCkyG++C ++H++
  EPS67891.1 379 LECDFYMKTGTCKYGSSCIYHHPE 402
                 58********************96 PP
6zf-CCCH35.22.1e-11424445627
                 -SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                 C+f+++tG CkyG +CkF H+p
  EPS67891.1 424 CPFYMKTGLCKYGVTCKFDHPP 445
                 ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.037129157IPR000571Zinc finger, CCCH-type
SMARTSM003566.2E-4129156IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.72E-6131156IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8131155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4135154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.788180208IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-4180207IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-9182207IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5185208IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-5186206IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.854227255IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-6227254IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10230254IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.15E-5231255IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5232253IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483298326IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6298325IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.77E-6300325IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-10300324IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-5304323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.911375403IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5375402IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6377404IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-9380402IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4381403IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483418446IPR000571Zinc finger, CCCH-type
SMARTSM003564.9E-5418445IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5422445IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4424443IPR000571Zinc finger, CCCH-type
PfamPF006428.2E-9424445IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
YAAGEAASTD LYSSRSTVNN AGISGDTSSR YLSWDSLASA AAVARYSVMN PGITASSHSY  60
GPPGLDAAIS LDSIHSGLKR NSAQCNTLYT TLLCAQINTG QTEAWYSTDL IEKRPRYEST  120
SHLPVYPQRP GEKDCDYYMQ TRTCKFGDSC IFHHPIWVPE GGAPNWKEVP AMPIESLPER  180
PGQPDCPYFM KTRRCKFGSR CRFNHPKDLI AQQGDLENGN LSSLPERPSE PPCAFYMKTG  240
KCKFGATCKF DHPKDVHPLC DGDENGACIP YKVAGDAKPA QQPASPALMH NSKGLPVRLG  300
EEDCPFYLKT GSCKYGATCH FNHPDRYAAI ASNLLTSSST HFGVPTASLL PNFDPRLSQT  360
TASLLGLVSA IYPQRPGQLE CDFYMKTGTC KYGSSCIYHH PEHRAENVKL TLSGLPRREG  420
AIHCPFYMKT GLCKYGVTCK FDHPPPGEVI AL
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020554067.10.0zinc finger CCCH domain-containing protein 37
SwissprotQ941Q31e-161C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLS8CSN40.0S8CSN4_9LAMI; Uncharacterized protein (Fragment)
STRINGMigut.M01488.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.11e-155floral homeotic protein (HUA1)
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]