PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS67877.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | GRAS | ||||||||
Protein Properties | Length: 450aa MW: 50657 Da PI: 6.9155 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 444.2 | 8.8e-136 | 36 | 446 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA++v+sg+le+a+ +L ++s+lasp+gd+mqR+a+yf eALa r++r+++++ ka+++++ s ++e++++k+f+e P+ k++++++N EPS67877.1 36 LIHLLVTCANHVASGNLENANIALDQISHLASPEGDTMQRIASYFSEALADRILRTWPGVHKAFRSTRIS--VAADEIMVRKMFFEFLPFTKVAFVITN 132 689************************************************************9988887..699************************ PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 qaI ea+ege++vH+iD++ +++QW +L++ L++Rpegpp+lRiT++++ +ke le++++ L++ Ae+l++pf+f + ++++le+l++e+Lrvk+ EPS67877.1 133 QAIIEAMEGEKMVHVIDLNGAEPVQWCTLIRDLSARPEGPPHLRITAIHH----HKEVLEQMAQVLTEEAEKLDIPFQFIP-IVSKLENLDIEKLRVKT 226 **************************************************....9**************************.7999************* PP GRAS 199 gEalaVnlvlqlhrll.............................................desvsleserdevLklvkslsPkvvvvveqeadhnses 252 gEala+++v + h+ll +++ + +s++d +L+++++lsPkv+vv+eq++dhn++s EPS67877.1 227 GEALAISSVTKFHELLasvnrpssstaishhlqrvimpvnssspvednanpfspcgnnntaSSPPQPSSRIDGFLNALWGLSPKVMVVTEQDSDHNGKS 325 *********************************************************99955555555599**************************** PP GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351 ++er++e+l++ysalfd+le+ lp++s er+k+E++llg+ei+n+++cegaer++rhe+le+W +r+++aGF++ +ls+++ qak+ll+ ++ dgy++ EPS67877.1 326 LMERLSESLYFYSALFDCLESALPKTSLERSKMEKMLLGEEIKNIISCEGAERKHRHEKLENWCKRFQSAGFTKFSLSYYTLLQAKRLLQSFNCDGYKI 424 *************************************************************************************************** PP GRAS 352 eeesgslvlgWkdrpLvsvSaW 373 +ee+g++ ++W drpL+svSaW EPS67877.1 425 KEENGCASIYWYDRPLFSVSAW 446 ********************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 55.714 | 10 | 427 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.1E-133 | 36 | 446 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
SSSVTSSPVQ VFPLMSLSPS YPWLKDLKPE DRGLYLIHLL VTCANHVASG NLENANIALD 60 QISHLASPEG DTMQRIASYF SEALADRILR TWPGVHKAFR STRISVAADE IMVRKMFFEF 120 LPFTKVAFVI TNQAIIEAME GEKMVHVIDL NGAEPVQWCT LIRDLSARPE GPPHLRITAI 180 HHHKEVLEQM AQVLTEEAEK LDIPFQFIPI VSKLENLDIE KLRVKTGEAL AISSVTKFHE 240 LLASVNRPSS STAISHHLQR VIMPVNSSSP VEDNANPFSP CGNNNTASSP PQPSSRIDGF 300 LNALWGLSPK VMVVTEQDSD HNGKSLMERL SESLYFYSAL FDCLESALPK TSLERSKMEK 360 MLLGEEIKNI ISCEGAERKH RHEKLENWCK RFQSAGFTKF SLSYYTLLQA KRLLQSFNCD 420 GYKIKEENGC ASIYWYDRPL FSVSAWSSRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-69 | 24 | 449 | 6 | 380 | Protein SCARECROW |
5b3h_D | 2e-69 | 24 | 449 | 6 | 380 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011080382.1 | 0.0 | scarecrow-like protein 3 | ||||
Swissprot | Q9LPR8 | 0.0 | SCL3_ARATH; Scarecrow-like protein 3 | ||||
TrEMBL | S8E686 | 0.0 | S8E686_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.D00643.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2914 | 24 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 0.0 | scarecrow-like 3 |
Publications ? help Back to Top | |||
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