PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67873.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family HSF
Protein Properties Length: 302aa    MW: 34705.2 Da    PI: 5.6243
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67873.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.81.9e-34181092102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F++k+y++++d++++eli+w + +nsf+vl++ +f++++Lp yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +gk + l++i 
    EPS67873.1  18 FVMKTYQMVDDQSTDELITWGRANNSFIVLEPLDFSRTILPAYFKHHNFSSFVRQLNTYGFRKVDPDR---------WEFANEWFLRGKAQVLCNIV 105
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
    EPS67873.1 106 RRKH 109
                   *997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.5E-5014107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.7E-3515107IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-3115107IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.6E-181841IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004479.1E-2918107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-185668IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405781IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.6E-186981IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MHEAVEVSSG SGSIVAPFVM KTYQMVDDQS TDELITWGRA NNSFIVLEPL DFSRTILPAY  60
FKHHNFSSFV RQLNTYGFRK VDPDRWEFAN EWFLRGKAQV LCNIVRRKHT PKSVSLHGDE  120
DRDELLMEIA KLKKEQRNLE LELEKMNRRL EITERKPQQM MNLLCKIVED PDFFLPKRMK  180
KLTESSEISE KKRKLMLCCS IKSEDEEEHE HNHPIPLISE STPASSSPDM EFDAYCCQSS  240
TSLEMSSPES LSHRQSASVQ GGYDNNNNNN HNGNYCCEGL VAMRENESPP IPYPFSLLGG  300
GF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-21110712129Heat shock factor protein 1
5d5v_B7e-21110712129Heat shock factor protein 1
5d5v_D7e-21110712129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00379DAPTransfer from AT3G24520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071260.14e-98heat stress transcription factor C-1-like
SwissprotQ9LV521e-74HSFC1_ARATH; Heat stress transcription factor C-1
TrEMBLS8DX830.0S8DX83_9LAMI; Uncharacterized protein
STRINGMigut.E00326.1.p6e-95(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68322333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.17e-78heat shock transcription factor C1
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]