PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67726.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

FAR1

Protein Properties

Length: 649aa MW: 74573.3 Da PI: 5.8983

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67726.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	67.3	4e-21	66	151	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 ++Yn+YA+e+GF +r+++s +++ ++e + ++C++eg++++++ + +r+etrtgC a++++++ + +++w++++++l+HnH l EPS67726.1 66 NYYNRYAEELGFGIRVKSSWTKRSSKEKRGAVLCCNCEGFKTTKEAA----GIPRKETRTGCLAMVRLRLVQqSNRWRLDEVKLDHNHLL 151 69**************************************98777....99*************999*************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.1E-18	66	151	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.5E-17	267	343	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.668	536	572	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	5.7E-5	544	570	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.7E-4	547	574	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 649 aa Download sequence Send to blast
ELPNDELEDE DISQSVKVET SDLQNALRQV LGIERFADAD TATDVARSRL APIEGMEFES 60 YDDAYNYYNR YAEELGFGIR VKSSWTKRSS KEKRGAVLCC NCEGFKTTKE AAGIPRKETR 120 TGCLAMVRLR LVQQSNRWRL DEVKLDHNHL LDHRRAQSSW SHKKIKSSAK RKTESAMDVE 180 IQTIKLYRTP AVNAVDSFKR LNFRNGDVRA LLDYFTRAKM GDPSFFYIMD FNDEGCVRNI 240 FWIDSRSRAA YGYFDDVIQI HVKCLSNENG MILSSFSCLN HRGQIVLLGS GFLADESTET 300 YLWVLRAWLT CMSGRTPRTV VTDQCKALQL AVSEVFPRAH HRFFLSLVMQ RLQKGSLVEV 360 TESEVFESVL NRAVYDSVRV EEFETAWEEM IRHFRLEDCE LLQALYEDRE KWVPAYVKDA 420 VLFGICSDNP LLFNGYLHED MTLDEFFNVY ELFQQERIQK EENPIEYAPS LRTSFGYEIQ 480 ASELYSKEIF LKFQQELVLM SSGSLTATQV HSNGPVITYA VNERSGNEDT TESKSFEVAY 540 DKVSSEVRCI CSCFNFRGYL CAHALTVLDY NGVESIPDQY ILTRWRKNAK RPLLHASKLV 600 SSNGIDSSNA IQRYDHMYRQ AMLVVAGGLA SREHHMVASQ SLNESLDKL

Sequence ? help Back to Top

Protein Sequence Length: 649 aa Download sequence Send to blast

ELPNDELEDE DISQSVKVET SDLQNALRQV LGIERFADAD TATDVARSRL APIEGMEFES  60
YDDAYNYYNR YAEELGFGIR VKSSWTKRSS KEKRGAVLCC NCEGFKTTKE AAGIPRKETR  120
TGCLAMVRLR LVQQSNRWRL DEVKLDHNHL LDHRRAQSSW SHKKIKSSAK RKTESAMDVE  180
IQTIKLYRTP AVNAVDSFKR LNFRNGDVRA LLDYFTRAKM GDPSFFYIMD FNDEGCVRNI  240
FWIDSRSRAA YGYFDDVIQI HVKCLSNENG MILSSFSCLN HRGQIVLLGS GFLADESTET  300
YLWVLRAWLT CMSGRTPRTV VTDQCKALQL AVSEVFPRAH HRFFLSLVMQ RLQKGSLVEV  360
TESEVFESVL NRAVYDSVRV EEFETAWEEM IRHFRLEDCE LLQALYEDRE KWVPAYVKDA  420
VLFGICSDNP LLFNGYLHED MTLDEFFNVY ELFQQERIQK EENPIEYAPS LRTSFGYEIQ  480
ASELYSKEIF LKFQQELVLM SSGSLTATQV HSNGPVITYA VNERSGNEDT TESKSFEVAY  540
DKVSSEVRCI CSCFNFRGYL CAHALTVLDY NGVESIPDQY ILTRWRKNAK RPLLHASKLV  600
SSNGIDSSNA IQRYDHMYRQ AMLVVAGGLA SREHHMVASQ SLNESLDKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073396.1	0.0	protein FAR1-RELATED SEQUENCE 8 isoform X1
Refseq	XP_020548549.1	0.0	protein FAR1-RELATED SEQUENCE 8 isoform X2
Refseq	XP_020548550.1	0.0	protein FAR1-RELATED SEQUENCE 8 isoform X2
TrEMBL	S8CS80	0.0	S8CS80_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.I00749.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1347	19	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	1e-175	FAR1-related sequence 8

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]