PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67461.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

Trihelix

Protein Properties

Length: 815aa MW: 90260.5 Da PI: 9.203

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67461.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	59.1	1.1e-18	723	802	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W +ev++Lie+rr+++ +++ k +++lWee+s+ ++ g +r+p qCk+ w +l ++y++ik+ + r +pyf+++ EPS67461.1 723 KWRPEEVKKLIEMRRKLHAEFQVVKGRMALWEEISSGLMVNGTTRTPGQCKSLWASLVQKYEEIKNDGSAR-----MAWPYFEEV 802 7*************************************************************9998875.....47**987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.60.15.10	5.4E-67	79	329	IPR001279	Metallo-beta-lactamase
SuperFamily	SSF56281	5.82E-74	80	494	IPR001279	Metallo-beta-lactamase
SMART	SM00849	9.6E-26	92	289	IPR001279	Metallo-beta-lactamase
Pfam	PF00753	5.3E-10	93	237	IPR001279	Metallo-beta-lactamase
Gene3D	G3DSA:3.60.15.10	7.3E-4	389	466	IPR001279	Metallo-beta-lactamase
Pfam	PF07521	2.3E-7	437	467	IPR011108	Zn-dependent metallo-hydrolase, RNA specificity domain
PROSITE pattern	PS01292	0	438	466	IPR001587	Ribonuclease J, conserved site
PROSITE profile	PS50090	8.327	716	780	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.1E-5	718	782	IPR009057	Homeodomain-like
Pfam	PF13837	6.7E-15	721	803	No hit	No description
CDD	cd12203	3.77E-18	722	787	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009658	Biological Process	chloroplast organization
GO:0009942	Biological Process	longitudinal axis specification
GO:0060918	Biological Process	auxin transport
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 815 aa Download sequence Send to blast
MAALCAVSVL HHKLFWLQPR FRKRFVSCCA SIPPPNVKGP KESKAPPKKV GRAEGARKSM 60 EDSVKRKMEQ LYEGTSGPPL RILPIGGLGE IGMNCMLIGN YDRYILVDAG VMFPDYDELG 120 VQKIIPDTTF IQKWSHKIEA VIITHGHEDH IGALPWVIPA LDSHTPIFAS SFTVELIKKR 180 LKEFGIFVPS RLKVFRIRKR FVAGPFEVEP IRVTHSIPDC SGLVFRCADG TILHTGDWKI 240 DETPLDGKVF DREALEELSK EGVTLMMSDS TNVLSPGRTL SEKVVAESLL RHISASKGRV 300 ITTQFASNVH RLGSVKAAAD LTGRKLVFVG MSLRTYLDAA WKDGTAPIDP STLVKSEDIE 360 AYAPKDLLIV TTGSQAEPRA ALNLASFGGS HALKLNKDDL ILYSAKVIPG NETRVMKMLN 420 RISEIGSTIV MGKNELLHTS GHAYREELDE LLKIVKPQHF LPIHGELLFL KEHELLAKST 480 GIHHTAVIRN GEMLGVSHLR SRRVLSNGFV SLGKENLQLM YSDGDKAFGT ATELCVEERM 540 RIASDGIIIV SMEIMRPQPA KESILPAAIK GKIRITTRCL WLDRGKLLDS LHRAAHASLS 600 SCPVNCPLAH MERTVSEVLK KLVRKYSSKR PEVVVIATEN PAAVLADEID GKLSGKPEMS 660 TSRKAIEGYD QVSSGEATWL DSSPETVEET DESAVESSSS SSPVPDDVAG QRLRKKTAAK 720 RNKWRPEEVK KLIEMRRKLH AEFQVVKGRM ALWEEISSGL MVNGTTRTPG QCKSLWASLV 780 QKYEEIKNDG SARMAWPYFE EVKGILLLSD SEVKK

Sequence ? help Back to Top

Protein Sequence Length: 815 aa Download sequence Send to blast

MAALCAVSVL HHKLFWLQPR FRKRFVSCCA SIPPPNVKGP KESKAPPKKV GRAEGARKSM  60
EDSVKRKMEQ LYEGTSGPPL RILPIGGLGE IGMNCMLIGN YDRYILVDAG VMFPDYDELG  120
VQKIIPDTTF IQKWSHKIEA VIITHGHEDH IGALPWVIPA LDSHTPIFAS SFTVELIKKR  180
LKEFGIFVPS RLKVFRIRKR FVAGPFEVEP IRVTHSIPDC SGLVFRCADG TILHTGDWKI  240
DETPLDGKVF DREALEELSK EGVTLMMSDS TNVLSPGRTL SEKVVAESLL RHISASKGRV  300
ITTQFASNVH RLGSVKAAAD LTGRKLVFVG MSLRTYLDAA WKDGTAPIDP STLVKSEDIE  360
AYAPKDLLIV TTGSQAEPRA ALNLASFGGS HALKLNKDDL ILYSAKVIPG NETRVMKMLN  420
RISEIGSTIV MGKNELLHTS GHAYREELDE LLKIVKPQHF LPIHGELLFL KEHELLAKST  480
GIHHTAVIRN GEMLGVSHLR SRRVLSNGFV SLGKENLQLM YSDGDKAFGT ATELCVEERM  540
RIASDGIIIV SMEIMRPQPA KESILPAAIK GKIRITTRCL WLDRGKLLDS LHRAAHASLS  600
SCPVNCPLAH MERTVSEVLK KLVRKYSSKR PEVVVIATEN PAAVLADEID GKLSGKPEMS  660
TSRKAIEGYD QVSSGEATWL DSSPETVEET DESAVESSSS SSPVPDDVAG QRLRKKTAAK  720
RNKWRPEEVK KLIEMRRKLH AEFQVVKGRM ALWEEISSGL MVNGTTRTPG QCKSLWASLV  780
QKYEEIKNDG SARMAWPYFE EVKGILLLSD SEVKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3bk1_A	1e-84	80	640	17	562	Metal dependent hydrolase
3bk2_A	1e-84	80	640	17	562	Metal dependent hydrolase
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Functional Description ? help Back to Top
Source	Description
UniProt	Essential protein required during embryogenesis, especially in initiating and maintaining the organization of shoot apical meristems (SAMs), cotyledons, and hypocotyls (PubMed:15266054, PubMed:25871650). Involved in auxin-mediated pathways during embryogenesis (PubMed:25871650). RNase that has both endonuclease and 5'-3' exonuclease activities. Involved in RNA surveillance to prevent overaccumulation of antisense RNA (PubMed:22033332). Probably involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay (By similarity). {ECO:0000250\|UniProtKB:Q72JJ7, ECO:0000269\|PubMed:15266054, ECO:0000269\|PubMed:22033332, ECO:0000269\|PubMed:25871650}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light. {ECO:0000269\|PubMed:25871650}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011073026.1	0.0	uncharacterized protein LOC105158090 isoform X2
Swissprot	Q84W56	0.0	RNJ_ARATH; Ribonuclease J
TrEMBL	S8CRI0	0.0	S8CRI0_9LAMI; Uncharacterized protein (Fragment)
STRING	Migut.I00512.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5874	23	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein

Publications ? help Back to Top
Bryant N,Lloyd J,Sweeney C,Myouga F,Meinke D Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis. Plant Physiol., 2011. 155(4): p. 1678-89 [PMID:21139083] Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885] Halpert M,Liveanu V,Glaser F,Schuster G The Arabidopsis chloroplast RNase J displays both exo- and robust endonucleolytic activities. Plant Mol. Biol., 2019. 99(1-2): p. 17-29 [PMID:30511330]