PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS67430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | C2H2 | ||||||||
Protein Properties | Length: 402aa MW: 44199.8 Da PI: 10.3381 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.8 | 0.00036 | 176 | 198 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C++Cg+ F r++ + H H EPS67430.1 176 SCQKCGEQFVRWEAVEEHHLYkH 198 7*****************87766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 177 | 198 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 3.74E-20 | 200 | 402 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 1.8E-9 | 225 | 379 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 402 aa Download sequence Send to blast |
MPAIWFRVKK SIYCKSEQAD FHEPRGGHQR SRSLSTISTK KSGRDRCGCS RSIANLKDVM 60 IHGSKRHTPK PTICSPRSIG SSELLNPITH EVVLSDSTCE LKIRTAIGGD SFSAGFEGTL 120 KPGTPGPGRI QVGVKQQGGL MGSPIRRTSS SLSRRSHGFV GFSPRPRSSF SPDSLSCQKC 180 GEQFVRWEAV EEHHLYKHAV TELTEGESSR RIVEIICRTT AGRSENGIER ILKVHNMQKT 240 LAQFEEYREV VKIKASKLSK KHPRCLADGN ELLRFHGAAV ECRLGVKGSS SLCISEKCRV 300 CRILRYGFST NKKETSSAGV FTAATSTRAL ESIQNSDGAR KALVVCRVIA GRVHRPLENV 360 KEMVGQTGFD SVAGKVGVQG NIEELYLLSP RALLPCFVVI YK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096128.1 | 0.0 | uncharacterized protein LOC105175392 | ||||
TrEMBL | S8CL31 | 0.0 | S8CL31_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.M01260.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2244 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27240.1 | 1e-143 | C2H2 family protein |
Publications ? help Back to Top | |||
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