PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67081.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

bHLH

Protein Properties

Length: 96aa MW: 10660.9 Da PI: 8.5329

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67081.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	22.9	1.6e-07	19	64	14	54
HHHHHHHHHHHCTSCCC........TTS-STCHHHHHHHHHHHHHH CS HLH 14 driNsafeeLrellPkas.....kapskKlsKaeiLekAveYIksL 54 d+i + ++L++l+P++ + ps K+ + +L+ +++YI+sL EPS67081.1 19 DQIADLVSRLQQLVPESHrggrrSSPSDKVPASKVLQDTCNYIRSL 64 6899999*******777***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.5E-8	3	80	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.87	5	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-8	7	81	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.9E-5	19	64	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 96 aa Download sequence Send to blast
MSSRRIRSRA STVTRISDDQ IADLVSRLQQ LVPESHRGGR RSSPSDKVPA SKVLQDTCNY 60 IRSLHQEVGN LSDQLSELLE TSNVDSDQAA IIRSLL

Functional Description ? help Back to Top
Source	Description
UniProt	Atypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269\|PubMed:16527868}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023747905.1	2e-32	transcription factor PRE6-like
Swissprot	Q9LJX1	1e-30	PRE5_ARATH; Transcription factor PRE5
TrEMBL	S8CQC8	2e-60	S8CQC8_9LAMI; Uncharacterized protein (Fragment)
STRING	PGSC0003DMT400007430	5e-31	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA353	24	161

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G28857.1	5e-33	bHLH family protein

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]