PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EPS67042.1

Organism

Genlisea aurea

Taxonomic ID

192259

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea

Family

BBR-BPC

Protein Properties

Length: 284aa MW: 31118.8 Da PI: 9.9872

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EPS67042.1	genome	LSMU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	320.4	5.6e-98	2	284	9	301
GAGA_bind 9 rnkgyyepaaslkenlglqlmssiaerdaki....rernlalsekkaavaerd..........maflqrdkalaernkalverdnkllalllvenslas 93 rn+gyyep lk++lglqlm s+a+rd k+ r++ + + ++ +a+++rd +++ r++++++ ++k+l++l+ EPS67042.1 2 RNWGYYEPP--LKSHLGLQLMPSVADRDIKPflsgRDNPI-MVSTTGAFHPRDcvitepplshIDY-VRETWINH--------KDKFLHMLP------- 81 9******..****************999666666.999*****9999988888788.78888888........899*9....... PP GAGA_bind 94 alpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekk 192 +p ++ + + s +s+ ++++p+++++a+ ++ e+ ++p ++++ +k++ ++ a++pk+ kakk++k ++++k++ k++ +r+ka kk EPS67042.1 82 GNPYSSILAEPSGSHHSMAMVHQPETNNEAAM-PNVEEPVVPP-KTETGPNKKRG-GGGGAPAATPKTAKAKKARKGPPAPKESAKPSV--QRAKAAKK 175 34666666677777788888888887776665.4444444444.33333333333.34478999********9999977777666..79** PP GAGA_bind 193 sidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAk 291 ++++ +ng+++D++ +P+PvCsCtG+++qCY+WG+GGWqSaCCtttiS++PLP+stkrrgaRiagrKmSqgafkk+LekLa+eGyd++ p+DL+++WAk EPS67042.1 176 NVEVCINGIDMDITDIPIPVCSCTGTPQQCYRWGCGGWQSACCTTTISMHPLPMSTKRRGARIAGRKMSQGAFKKVLEKLASEGYDFNSPIDLRTYWAK 274 *********************************************************************************************** PP GAGA_bind 292 HGtnkfvtir 301 HGtnkfv ir EPS67042.1 275 HGTNKFVVIR 284 ******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.1E-149	2	284	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	4.6E-106	2	284	IPR010409	GAGA-binding transcriptional activator

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009723	Biological Process	response to ethylene
GO:0050793	Biological Process	regulation of developmental process
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
LRNWGYYEPP LKSHLGLQLM PSVADRDIKP FLSGRDNPIM VSTTGAFHPR DCVITEPPLS 60 HIDYVRETWI NHKDKFLHML PGNPYSSILA EPSGSHHSMA MVHQPETNNE AAMPNVEEPV 120 VPPKTETGPN KKRGGGGGAP AATPKTAKAK KARKGPPAPK ESAKPSVQRA KAAKKNVEVC 180 INGIDMDITD IPIPVCSCTG TPQQCYRWGC GGWQSACCTT TISMHPLPMS TKRRGARIAG 240 RKMSQGAFKK VLEKLASEGY DFNSPIDLRT YWAKHGTNKF VVIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269\|PubMed:14731261, ECO:0000269\|PubMed:15722463}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00253	DAP	Transfer from AT2G01930	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011070518.1	1e-165	protein BASIC PENTACYSTEINE1-like
Swissprot	Q9SKD0	8e-98	BPC1_ARATH; Protein BASIC PENTACYSTEINE1
TrEMBL	S8E434	0.0	S8E434_9LAMI; Uncharacterized protein (Fragment)
STRING	XP_009762917.1	1e-140	(Nicotiana sylvestris)
STRING	XP_009608500.1	1e-140	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9061	24	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01930.2	2e-91	basic pentacysteine1

Publications ? help Back to Top
Leushkin EV, et al. The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences. BMC Genomics, 2013. 14: p. 476 [PMID:23855885]