PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS67038.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family bHLH
Protein Properties Length: 78aa    MW: 9038.5 Da    PI: 10.4092
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS67038.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.52.4e-131762655
                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                +++Er RR +i +++ +L+el+P+     +k  + +++L  Av+YIk+Lq
  EPS67038.1 17 SIAERVRRTKISERMRKLQELVPNM----DKQTNTSDMLDFAVDYIKDLQ 62
                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.5071161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-171474IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.62E-91566No hitNo description
Gene3DG3DSA:4.10.280.102.1E-161672IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-131767IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-101762IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 78 aa     Download sequence    Send to blast
VPCKIRAKRG CATHPRSIAE RVRRTKISER MRKLQELVPN MDKQTNTSDM LDFAVDYIKD  60
LQRQVKTLSD DRAKCSCS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020265966.12e-46transcription factor bHLH130-like
RefseqXP_021278094.11e-45transcription factor bHLH122-like isoform X1
RefseqXP_021278095.19e-46transcription factor bHLH122-like isoform X2
SwissprotQ66GR32e-44BH130_ARATH; Transcription factor bHLH130
TrEMBLS8DV476e-50S8DV47_9LAMI; Uncharacterized protein (Fragment)
STRINGVIT_06s0004g01740.t018e-46(Vitis vinifera)
STRINGEOY325685e-45(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51942437
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.17e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]