PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS67033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | MYB | ||||||||
Protein Properties | Length: 133aa MW: 15529.5 Da PI: 9.3257 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.1 | 1.5e-16 | 25 | 70 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++ EPS67033.1 25 RGHWRPAEDAKLKELVAIFGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 70 899*****************************.***********996 PP | |||||||
2 | Myb_DNA-binding | 58.8 | 1.2e-18 | 77 | 120 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+ EPS67033.1 77 RRAFTEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 120 678*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.956 | 20 | 71 | IPR017930 | Myb domain |
SMART | SM00717 | 8.4E-14 | 24 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.74E-29 | 24 | 118 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.4E-16 | 25 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.8E-27 | 26 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.96E-12 | 28 | 69 | No hit | No description |
PROSITE profile | PS51294 | 27.288 | 72 | 126 | IPR017930 | Myb domain |
SMART | SM00717 | 2.1E-14 | 76 | 124 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-15 | 77 | 119 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.42E-11 | 79 | 119 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 79 | 125 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
NPEEDQDPAV PMHGCDGGGS KHCARGHWRP AEDAKLKELV AIFGPQNWNL IAEKLEGRSG 60 KSCRLRWFNQ LDPRINRRAF TEEEEERLMA AHRLYGNKWA MIARLFPGRT DNAVKNHWHV 120 IMARKYREQQ QQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-34 | 19 | 126 | 1 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001307310.1 | 3e-75 | transcription factor MYB117 | ||||
Refseq | XP_015075753.1 | 3e-75 | transcription factor MYB105 | ||||
Swissprot | Q9SEZ4 | 3e-71 | MY105_ARATH; Transcription factor MYB105 | ||||
TrEMBL | S8DV42 | 3e-95 | S8DV42_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Solyc05g007870.1.1 | 1e-74 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1684 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69560.1 | 1e-73 | myb domain protein 105 |
Publications ? help Back to Top | |||
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