PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS67020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | NAC | ||||||||
Protein Properties | Length: 198aa MW: 22802.9 Da PI: 9.6054 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 113.7 | 2e-35 | 22 | 166 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.........tksg 81 lp+G++F+Ptd+el+ e+L++kv k ++++ +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ + EPS67020.1 22 LPAGVKFDPTDQELI-EHLEAKVGVGKetkshplIDEFIpTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqtecdhlqGGET 118 799************.99****9877755665443333333766646**********.555666799******************75655555443377 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+++vl+ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l EPS67020.1 119 RWHKTGKTRPVLA-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 166 8************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-39 | 16 | 185 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.046 | 22 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-16 | 23 | 166 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
SKHCPNCGHK LDGKHCPDWV RLPAGVKFDP TDQELIEHLE AKVGVGKETK SHPLIDEFIP 60 TIEGEDGICY THPEKLPGVT RDGLSRHFFH RPSKAYTTGT RKRRKIQTEC DHLQGGETRW 120 HKTGKTRPVL ANGKQKGCKK ILVLYTNFGK NRKPEKTNWV MHQYHLGKHE EEKEGELVVS 180 KIFYQTQPRQ CNWSSERS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-13 | 20 | 166 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024179476.1 | 1e-129 | NAC domain-containing protein 75-like isoform X1 | ||||
Refseq | XP_024179477.1 | 1e-130 | NAC domain-containing protein 75-like isoform X2 | ||||
Refseq | XP_024179478.1 | 1e-130 | NAC domain-containing protein 75-like isoform X3 | ||||
Swissprot | Q9M0F8 | 1e-124 | NAC75_ARATH; NAC domain-containing protein 75 | ||||
TrEMBL | S8CK06 | 1e-145 | S8CK06_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Solyc05g026180.1.1 | 1e-127 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400043521 | 1e-127 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4057 | 24 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29230.1 | 1e-113 | NAC domain containing protein 75 |
Publications ? help Back to Top | |||
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