PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS66985.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | HB-other | ||||||||
Protein Properties | Length: 187aa MW: 20458 Da PI: 8.2336 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.7 | 2.6e-20 | 11 | 67 | 1 | 57 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 r kR+ t+ qle+Le+ ++ + yps+++r++L++kl+Lt+rq ++WF+ rR k+kk EPS66985.1 11 RPKRQMKTPFQLEVLEKTYATEAYPSEATRQQLSAKLSLTDRQLQMWFCHRRLKDKK 67 679****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-19 | 3 | 68 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-18 | 5 | 68 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.795 | 8 | 68 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.0E-18 | 10 | 72 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.7E-18 | 11 | 67 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.11E-16 | 11 | 68 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
VNQTPPEGSK RPKRQMKTPF QLEVLEKTYA TEAYPSEATR QQLSAKLSLT DRQLQMWFCH 60 RRLKDKKEAG GTDKTDAVTT AIKQRVPLSG ATKGLTESFR EEQAAVNPGG GHMSGFSSGS 120 GSGSGSRSAE FDNGEAVPVL HPRYHDSPRM IMERRIIACV EAQLGEPIRQ DGPILGVEFD 180 ELPAGAF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 60 | 67 | RRLKDKKE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096357.1 | 3e-67 | homeobox-DDT domain protein RLT1 isoform X1 | ||||
Swissprot | F4HY56 | 9e-45 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | S8CJX1 | 1e-136 | S8CJX1_9LAMI; Uncharacterized protein (Fragment) | ||||
STRING | Migut.M01107.1.p | 1e-63 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2142 | 23 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28420.1 | 4e-43 | homeobox-1 |
Publications ? help Back to Top | |||
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