PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS66815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | AP2 | ||||||||
Protein Properties | Length: 293aa MW: 33653.8 Da PI: 8.9892 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 26.8 | 1.3e-08 | 95 | 123 | 1 | 34 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslg 34 s+y+GV++++++grW+++I+ + k+++lg EPS66815.1 95 SQYRGVTFYRRTGRWESHIWA------CgKQVYLG 123 78*******************......55****99 PP | |||||||
2 | AP2 | 43.5 | 8e-14 | 211 | 261 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k++g EPS66815.1 211 SKYRGVTLHK-CGRWEARMGQY--L-GKKYIYLGLFDSEIEAARAYDKAAIKFYG 261 89********.7******5552..1.25**********99***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 14.368 | 96 | 176 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.7E-18 | 96 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-6 | 146 | 176 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-8 | 147 | 176 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.89E-24 | 211 | 271 | No hit | No description |
SuperFamily | SSF54171 | 2.03E-17 | 211 | 269 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.0E-9 | 211 | 261 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.265 | 212 | 269 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.7E-31 | 212 | 275 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.1E-16 | 212 | 269 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 213 | 224 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-6 | 251 | 271 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 293 aa Download sequence Send to blast |
MDASSTDNSD LGRFLGFNVW KNNGDYAEGE KSSVGYELRQ FLPDRDDAKK NQRIDCVEDR 60 SVAEEQVIMA AQHQQWQLRR QQVTKSRRGP RSRSSQYRGV TFYRRTGRWE SHIWACGKQV 120 YLGNGRLTSL HQQLILIQQL IILKLAGGFD TAHAAARAYD LAAIKFRGLE ADINFEVCDY 180 EDDLKQIKDL TTEEFVHVLR RQSTGFSRGA SKYRGVTLHK CGRWEARMGQ YLGKKYIYLG 240 LFDSEIEAAR AYDKAAIKFY GREALTNFEP AMYDKDPDSQ GEKQQTPNSF LMG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Together with SNB, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q84TB5}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:20017947, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011077383.1 | 1e-100 | floral homeotic protein APETALA 2 | ||||
Swissprot | B8AMA9 | 4e-90 | AP22_ORYSI; APETALA2-like protein 2 | ||||
Swissprot | Q84TB5 | 4e-90 | AP22_ORYSJ; APETALA2-like protein 2 | ||||
TrEMBL | S8CJA6 | 0.0 | S8CJA6_9LAMI; Uncharacterized protein | ||||
STRING | Gorai.009G104200.1 | 4e-92 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA591 | 24 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 9e-83 | AP2 family protein |
Publications ? help Back to Top | |||
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