PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66651.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family ARR-B
Protein Properties Length: 317aa    MW: 35734.6 Da    PI: 8.3368
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66651.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like92.24.4e-29190243155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W  +LH++Fv av+qL G++kA+Pk+il+lm+v+gLt+e+v+SHLQkYRl
  EPS66651.1 190 KPRVVWCMDLHRKFVAAVNQL-GIDKAVPKRILDLMNVEGLTRENVASHLQKYRL 243
                 79*******************.********************************8 PP
2Response_reg80.36.6e-2791171109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl vdD+p+ +  l  +l+k +y +v+++ +++ al++l+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++a+++++++l+ +  Ga 
    EPS66651.1   9 VLAVDDDPVCLATLDGLLRKCQY-NVTTTNQAKVALKMLRENKdrFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSANSDPKLVLKGVTHGAC 103
                   799********************.***************888889*******************87754.558************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l+Kp+  eel +
    EPS66651.1 104 DYLVKPVRLEELKN 117
                   ***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.6E-1491313IPR017053Response regulator B-type, plant
SuperFamilySSF521729.53E-365130IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.6E-426145No hitNo description
SMARTSM004481.6E-307119IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.4528123IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.2E-249117IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.40E-2710123No hitNo description
SuperFamilySSF466895.38E-19187247IPR009057Homeodomain-like
PROSITE profilePS512949.684187246IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.7E-30188248IPR009057Homeodomain-like
TIGRFAMsTIGR015578.3E-25190243IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
DYHPHGLRVL AVDDDPVCLA TLDGLLRKCQ YNVTTTNQAK VALKMLRENK DRFDLVISDV  60
HMPDMDGFKL LELVGLEMDL PVIMLSANSD PKLVLKGVTH GACDYLVKPV RLEELKNIWQ  120
HVIRRRRVET TKGQGQANHN SNDHRQSKDV LRPNGEDHST NANSSRKRKD DEDDSEENEF  180
IGEDPSTQKK PRVVWCMDLH RKFVAAVNQL GIDKAVPKRI LDLMNVEGLT RENVASHLQK  240
YRLYLKRISS AQQSDMAAVL GVKDSHFMQI GSYSNGLGDA HRSGRFENSL VSRYMTGGLL  300
GRMDLSSFRN LSSSSSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-25186249164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084015.11e-146two-component response regulator ARR12
SwissprotA2X1N21e-118ORR24_ORYSI; Two-component response regulator ORR24
TrEMBLS8CP840.0S8CP84_9LAMI; Uncharacterized protein (Fragment)
STRINGXP_009795713.11e-137(Nicotiana sylvestris)
STRINGXP_009599949.11e-137(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22582458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-105response regulator 12
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]