PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EPS66562.1
Organism
Genlisea aurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
Family TALE
Protein Properties Length: 269aa    MW: 31152.2 Da    PI: 6.5176
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EPS66562.1genomeLSMUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.3e-091962302155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yps++e+  LA+ +gL+++q+ +WF N+R ++
  EPS66562.1 196 KWPYPSESEKVALAEATGLDQKQINNWFINQRKRH 230
                 669*****************************885 PP
2ELK34.35e-12150171122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK++Ll+KYsgyL+sLk+E+s
  EPS66562.1 150 ELKNHLLKKYSGYLSSLKHELS 171
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.5E-21246IPR005540KNOX1
PfamPF037908.5E-22345IPR005540KNOX1
SMARTSM012567.6E-2656107IPR005541KNOX2
PfamPF037911.4E-2361106IPR005541KNOX2
PfamPF037899.2E-10150171IPR005539ELK domain
PROSITE profilePS5121310.929150170IPR005539ELK domain
SMARTSM011881.3E-6150171IPR005539ELK domain
PROSITE profilePS5007113.021170233IPR001356Homeobox domain
SuperFamilySSF466898.55E-20171244IPR009057Homeodomain-like
SMARTSM003897.8E-13172237IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-27175235IPR009057Homeodomain-like
CDDcd000865.94E-12182234No hitNo description
PfamPF059204.6E-17190229IPR008422Homeobox KN domain
PROSITE patternPS000270208231IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
VEAMKAKILA HPQYSNLLEA YLDCQKVGAP PEVVARLVQV RQNFESWQRA AVATANRDDQ  60
HKDPELDQFM EAYYDMLVKY REELTRPLQE AMEFMRRVES QLTLLTDAPV RVFNSDENCG  120
GASSDDDQDH QSGGETGMLL DIDPRAEDRE LKNHLLKKYS GYLSSLKHEL SKKKKKGKLP  180
KEARQKLLSW WEVHYKWPYP SESEKVALAE ATGLDQKQIN NWFINQRKRH WKPSEDVQFM  240
VMDGLHHQNA AGFYMEGHYL GDGPYRLGP
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00675ChIP-seqTransfer from GRMZM2G017087Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019153386.11e-152PREDICTED: homeotic protein knotted-1-like
SwissprotQ413301e-143KN1_SOLLC; Homeotic protein knotted-1
TrEMBLS8E2R20.0S8E2R2_9LAMI; Uncharacterized protein (Fragment)
STRINGEOY156241e-148(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA49732333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.11e-118KNOTTED-like from Arabidopsis thaliana
Publications ? help Back to Top
  1. Leushkin EV, et al.
    The miniature genome of a carnivorous plant Genlisea aurea contains a low number of genes and short non-coding sequences.
    BMC Genomics, 2013. 14: p. 476
    [PMID:23855885]