PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | EPS66447.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Genlisea
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Family | bHLH | ||||||||
Protein Properties | Length: 170aa MW: 19452.2 Da PI: 8.0669 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12 | 0.00039 | 22 | 64 | 8 | 54 |
HHHHH.HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrR.RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r r R R+ i +++ eLrel+P++ +K s L k+++++ L EPS66447.1 22 RPRPRdRQLIQDRIKELRELVPNS-----EKCSIDGLLDKTIKHMLFL 64 5555548889*************7.....5666666777777766655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 10.093 | 15 | 64 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.3E-5 | 28 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-5 | 28 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
SRLSRSNKRK DCSSSSDNNN QRPRPRDRQL IQDRIKELRE LVPNSEKCSI DGLLDKTIKH 60 MLFLRNVSDR ADKLRKHCCF QEADKMMVEE SGASWAVELG SSSSSSDAQT CPIVVKDLDQ 120 PGQMLIEMLC CDHGRFLEIT NAIHRLQLTV LHGVMEKSPP RESWARFIVE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that regulates root development; promotes the production of stele cells in roots. Coordinately controls the number of all vascular cell types by regulating the size of the pool of cells from which they arise. {ECO:0000269|PubMed:17626058}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012832038.1 | 1e-69 | PREDICTED: transcription factor LHW-like | ||||
Swissprot | Q9XIN0 | 3e-43 | LHW_ARATH; Transcription factor LHW | ||||
TrEMBL | S8E2G4 | 1e-121 | S8E2G4_9LAMI; Prf interactor 30137 (Fragment) | ||||
STRING | Migut.J00297.1.p | 4e-69 | (Erythranthe guttata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.3 | 8e-34 | conserved peptide upstream open reading frame 7 |